FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1476.ptfa, 1369 aa
 vs ./tmplib.26680 library

1767648 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 12.1457+/-0.00926; mu= -14.1914+/- 0.614
 mean_var=494.9492+/-120.025, 0's: 0 Z-trim: 1  B-trim: 25 in 1/35
 Lambda= 0.0576

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0314  ( 886 res)   mbg04168                   ( 886)  272   38  0.0096


>>mKIAA0314  ( 886 res)   mbg04168                        (886 aa)
 initn: 279 init1: 245 opt: 272  Z-score: 141.6  bits: 38.0 E(): 0.0096
Smith-Waterman score: 278;  37.107% identity (43.704% ungapped) in 159 aa overlap (1211-1368:1-136)

             1190      1200      1210      1220      1230      1240
mKIAA1 LACSKSVVSEIDKNIEYMSNLRRDKWMVEGKLRKLRIIHAKKTGKRDASGGIDLGEEQHP
                                     .::.:.   ::.::. ..   .  : :.  
mKIAA0                               RLRRLKTALAKRTGRPEV---MMEGAED--
                                             10           20       

             1250      1260      1270      1280      1290      1300
mKIAA1 LGTPTPGRKRRRKGGDSDYDDDDDDDSDDQADEDEEDEEDKDDKKGKKTDICEDEDEGDQ
        :    ::.:  .  .        . :  . .:.::.      ..:.:      : : : 
mKIAA0 -GL---GRRRSSRIME--------ETSGIEEEEEEENTTAVHGRRGRK------EGEIDV
              30                40        50        60             

              1310      1320      1330      1340      1350         
mKIAA1 TAS-VEELEKQIEKLSKQQSQYRRKLFDASHSLRSMMFGQDRYRRRYWILPQCGGIFVEG
       .:: . :::..::::::.:  .:.::. .:. ::.. .:::::::.::.::  .::::::
mKIAA0 AASSIPELERHIEKLSKRQLFFRKKLLHSSQMLRAVSLGQDRYRRHYWVLPYLAGIFVEG
        70        80        90       100       110       120       

    1360                                                           
mKIAA1 MESGEGLEEI                                                  
        :..   :.                                                   
mKIAA0 SEGSTVTEDEIKQETESLMEVVTSTPSSARASVKRELTGSNASTSPARSRGRPRKPKPGS
       130       140       150       160       170       180       




1369 residues in 1 query   sequences
1767648 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:46:07 2006 done: Mon Mar 27 10:46:08 2006
 Scan time:  1.250 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]