FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1124.ptfa, 1086 aa
 vs ./tmplib.26680 library

1767931 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.3498+/-0.00812; mu= -1.8881+/- 0.537
 mean_var=341.2542+/-80.996, 0's: 0 Z-trim: 14  B-trim: 0 in 0/36
 Lambda= 0.0694

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0451  ( 344 res)   mbh04493                   ( 344)  984  113   1e-25


>>mKIAA0451  ( 344 res)   mbh04493                        (344 aa)
 initn: 1033 init1: 542 opt: 984  Z-score: 554.1  bits: 112.6 E(): 1e-25
Smith-Waterman score: 1081;  50.435% identity (56.863% ungapped) in 345 aa overlap (778-1085:1-343)

       750       760       770       780       790       800       
mKIAA1 PGHVQWMAVFKDRLCVGYPSGFSLLSIQGDGPPLDLVNPTDPSLAFLSQQSFDALCAVEL
                                     : : .... .: .:.:.:.: .:::::::.
mKIAA0                               GGPCNMLHSNDHTLSFISHQPMDALCAVEI
                                             10        20        30

       810       820       830       840       850       860       
mKIAA1 KSEEYLLCFSHMGLYVDPQGRRSRMQELMWPAAPVACSCSPTHVTVYSEYGVDVFDVRTM
       ...::::::. .:.:.: ::::::.::::::: : .:  .  ...:::: .::.::: .:
mKIAA0 SNKEYLLCFNSIGIYTDCQGRRSRQQELMWPANPSSCCYNAPYLSVYSENAVDIFDVNSM
               40        50        60        70        80        90

       870       880       890       900        910       920      
mKIAA1 EWVQTIGLRRIRPLNSDGSLNLLGCEPPRLIYFKNKFS-GTILNVPDTSDNSKKQMLRT-
       ::.::. :...::::..::::::: :  ::::::::.. :  : ::.:::::.:::.:. 
mKIAA0 EWIQTLPLKKVRPLNTEGSLNLLGLETIRLIYFKNKMAEGDELVVPETSDNSRKQMVRNI
              100       110       120       130       140       150

         930       940       950       960       970       980     
mKIAA1 RSKRRFVFKVPEEERLQQRREMLRDPELRSKMISNPTNFNHVAHMGPGDGMQVLMDLPLS
        .:::. :.::::::.:::::::::::.:.:.:::::::::.::::::::.:.: :::..
mKIAA0 NNKRRYSFRVPEEERMQQRREMLRDPEMRNKLISNPTNFNHIAHMGPGDGIQILKDLPMN
              160       170       180       190       200       210

         990                         1000      1010      1020      
mKIAA1 AAPTVQEE------------KQGPTP-------AGLPRQPPSRSKPYVSWPSSGGS----
         :  ..             :. : :       .::  .  ...   ..   ::::    
mKIAA0 PRPQESRTVFSGSVSIPSITKSRPEPVRSMSASSGLSARSSAQNGSALKREFSGGSYNTK
              220       230       240       250       260       270

                     1030       1040      1050      1060      1070 
mKIAA1 -EPGVPVP---------LRSMSD-PDQDFDKEPDSDSTKHSTPSNSSNPSGPPSPNSPHR
        .: .: :         . . :: : .:.: : :::: .::: ::::: :.:::: ::..
mKIAA0 RQP-MPSPSEGSLSSGGMDQGSDAPARDYDGE-DSDSPRHSTASNSSNLSSPPSPISPQK
               280       290       300        310       320        

             1080      
mKIAA1 SQ-LPMEGLDQPSCDA
       .. : .:. :. : : 
mKIAA0 TKSLSLESTDRGSWDP
      330       340    




1086 residues in 1 query   sequences
1767931 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:36:42 2006 done: Mon Mar 27 10:36:43 2006
 Scan time:  1.000 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]