# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj36052.fasta.nr -Q ../query/mKIAA2001.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA2001, 745 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7901672 sequences Expectation_n fit: rho(ln(x))= 5.9408+/-0.000201; mu= 10.1871+/- 0.011 mean_var=125.3254+/-23.883, 0's: 32 Z-trim: 113 B-trim: 402 in 1/65 Lambda= 0.114566 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|118572614|sp|Q5DTT4.2|RGAG4_MOUSE RecName: Full ( 599) 4059 682.5 1.2e-193 gi|149042171|gb|EDL95878.1| rCG36266 [Rattus norve ( 601) 3693 622.0 2e-175 gi|74007773|ref|XP_549073.2| PREDICTED: similar to ( 752) 2060 352.2 4.1e-94 gi|13874446|dbj|BAB46855.1| hypothetical protein [ ( 400) 1312 228.3 4.4e-57 gi|50949517|emb|CAB94872.2| hypothetical protein [ ( 370) 1110 194.9 4.7e-47 gi|157954422|ref|NP_001103285.1| paternally expres ( 405) 357 70.5 1.5e-09 gi|73976337|ref|XP_539424.2| PREDICTED: similar to ( 379) 354 69.9 2e-09 gi|187761320|ref|NP_001120682.1| paternally expres ( 788) 357 70.8 2.3e-09 gi|109069256|ref|XP_001085478.1| PREDICTED: simila ( 325) 350 69.2 2.8e-09 gi|13810537|dbj|BAB43951.1| paternally expressed g ( 325) 349 69.0 3.2e-09 gi|119597187|gb|EAW76781.1| hCG1642748, isoform CR ( 401) 349 69.1 3.6e-09 gi|172046699|sp|Q86TG7.2|PEG10_HUMAN RecName: Full ( 708) 349 69.4 5.4e-09 gi|194209640|ref|XP_001915670.1| PREDICTED: patern ( 765) 349 69.4 5.7e-09 gi|108885167|gb|ABC54572.3| paternally expressed 1 ( 367) 343 68.1 6.8e-09 gi|111117522|gb|ABH05669.1| paternal expression 10 ( 403) 343 68.1 7.3e-09 gi|187829058|ref|NP_001120696.1| paternally expres ( 758) 343 68.4 1.1e-08 gi|149261896|ref|XP_001000346.2| PREDICTED: hypoth ( 199) 333 66.2 1.4e-08 gi|146134321|dbj|BAF57230.1| paternally expressed ( 317) 333 66.4 1.9e-08 gi|109473089|ref|XP_001053454.1| PREDICTED: simila ( 364) 324 65.0 6e-08 gi|109478380|ref|XP_001054777.1| PREDICTED: hypoth ( 265) 322 64.5 6.1e-08 gi|12620394|gb|AAG60684.1|AF316578_1 gag-protease ( 704) 325 65.4 8.4e-08 gi|150846344|gb|EDN21537.1| predicted protein [Bot ( 125) 314 62.8 9.1e-08 gi|31376257|dbj|BAC77244.1| paternally expressed 1 ( 376) 320 64.3 9.7e-08 gi|109472669|ref|XP_001070896.1| PREDICTED: hypoth ( 163) 313 62.8 1.2e-07 gi|109480113|ref|XP_001063529.1| PREDICTED: hypoth ( 449) 319 64.2 1.2e-07 gi|224080578|ref|XP_002191349.1| PREDICTED: hypoth ( 230) 315 63.3 1.2e-07 gi|149258729|ref|XP_001473076.1| PREDICTED: hypoth ( 371) 317 63.8 1.4e-07 gi|109490763|ref|XP_001075128.1| PREDICTED: hypoth ( 204) 313 62.9 1.4e-07 gi|109461086|ref|XP_001068158.1| PREDICTED: hypoth ( 178) 312 62.6 1.5e-07 gi|109500077|ref|XP_001070623.1| PREDICTED: hypoth ( 160) 311 62.4 1.5e-07 gi|148682032|gb|EDL13979.1| mCG64208 [Mus musculus ( 444) 317 63.9 1.5e-07 gi|109498257|ref|XP_001071266.1| PREDICTED: hypoth ( 168) 311 62.5 1.6e-07 gi|109501038|ref|XP_001057439.1| PREDICTED: hypoth ( 169) 311 62.5 1.6e-07 gi|149264191|ref|XP_001472642.1| PREDICTED: hypoth ( 430) 316 63.7 1.7e-07 gi|172045711|sp|Q7TN75.2|PEG10_MOUSE RecName: Full ( 958) 320 64.7 1.8e-07 gi|98985814|ref|NP_570947.2| paternally expressed (1006) 320 64.8 1.9e-07 gi|126272632|ref|XP_001371439.1| PREDICTED: hypoth ( 264) 311 62.7 2.1e-07 gi|72169538|ref|XP_800565.1| PREDICTED: hypothetic ( 136) 307 61.7 2.1e-07 gi|109483664|ref|XP_001079158.1| PREDICTED: hypoth ( 160) 307 61.8 2.4e-07 gi|149263117|ref|XP_001478884.1| PREDICTED: hypoth ( 537) 314 63.5 2.5e-07 gi|109504425|ref|XP_001072916.1| PREDICTED: hypoth ( 145) 306 61.6 2.5e-07 gi|109493310|ref|XP_001067694.1| PREDICTED: simila ( 417) 312 63.0 2.6e-07 gi|149269740|ref|XP_001477361.1| PREDICTED: hypoth ( 111) 304 61.1 2.6e-07 gi|109465686|ref|XP_001065784.1| PREDICTED: hypoth ( 219) 306 61.8 3.3e-07 gi|109458072|ref|XP_001077190.1| PREDICTED: hypoth ( 186) 305 61.5 3.3e-07 gi|109457537|ref|XP_001056403.1| PREDICTED: hypoth ( 221) 306 61.8 3.4e-07 gi|211964146|gb|EEA99341.1| hypothetical protein T ( 205) 305 61.6 3.6e-07 gi|109511367|ref|XP_001071582.1| PREDICTED: hypoth ( 249) 306 61.8 3.6e-07 gi|54656153|gb|EAL35225.1| hypothetical protein Ch ( 985) 314 63.8 3.7e-07 gi|109491984|ref|XP_001081518.1| PREDICTED: hypoth ( 131) 302 60.9 3.7e-07 >>gi|118572614|sp|Q5DTT4.2|RGAG4_MOUSE RecName: Full=Ret (599 aa) initn: 4059 init1: 4059 opt: 4059 Z-score: 3632.7 bits: 682.5 E(): 1.2e-193 Smith-Waterman score: 4059; 100.000% identity (100.000% similar) in 599 aa overlap (147-745:1-599) 120 130 140 150 160 170 mKIAA2 AHLLISASSCTPHNSLPPSAQHSKPQELVTMSEAAGNLNSLRLANVALREELNALRGENV :::::::::::::::::::::::::::::: gi|118 MSEAAGNLNSLRLANVALREELNALRGENV 10 20 30 180 190 200 210 220 230 mKIAA2 QLGLQLGRALAEVNSLRGNVSSYIRWPMPIVPVLAEENFEFLLNETDPTPEEEEEEEEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 QLGLQLGRALAEVNSLRGNVSSYIRWPMPIVPVLAEENFEFLLNETDPTPEEEEEEEEEV 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA2 PFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHSPMLKEPTFEFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 PFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHSPMLKEPTFEFL 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA2 LPPLERPDIEPFSGDPVYLAEFLMQLETFIADHEDHFPGGAERVAFLISFFTGEARDWAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 LPPLERPDIEPFSGDPVYLAEFLMQLETFIADHEDHFPGGAERVAFLISFFTGEARDWAI 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA2 SVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNCTLGSYADAFQFLAQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 SVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNCTLGSYADAFQFLAQF 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA2 LSWDDCRLQNQFLKGLSEIFRKELLWSTEVADLDELILECVKIERKVRVPKTASLTGVQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 LSWDDCRLQNQFLKGLSEIFRKELLWSTEVADLDELILECVKIERKVRVPKTASLTGVQN 280 290 300 310 320 330 480 490 500 510 520 530 mKIAA2 SCCPFALIPNEDENEGVEFYSENEGEGEEAGGYRLYLKDQRQHMTAFPQEMREEEEEMRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 SCCPFALIPNEDENEGVEFYSENEGEGEEAGGYRLYLKDQRQHMTAFPQEMREEEEEMRK 340 350 360 370 380 390 540 550 560 570 580 590 mKIAA2 EEDEMEDEEDEDEDEDYEFEEEDEDDDDEEEEEEEEEEEDKEEEMKNEDSDENKYEEEDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 EEDEMEDEEDEDEDEDYEFEEEDEDDDDEEEEEEEEEEEDKEEEMKNEDSDENKYEEEDE 400 410 420 430 440 450 600 610 620 630 640 650 mKIAA2 VIVRVLEPEQEQEREEIEHEHVYVHEHIHAHVHTLAAHHHGLHGELMVMDEPVLVDTSTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 VIVRVLEPEQEQEREEIEHEHVYVHEHIHAHVHTLAAHHHGLHGELMVMDEPVLVDTSTQ 460 470 480 490 500 510 660 670 680 690 700 710 mKIAA2 TISSAIGYHAENYLGVSPSVMHSSRQRSQNRVPLLEGLPGTNSSFYSPPPLMRHAGRLGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 TISSAIGYHAENYLGVSPSVMHSSRQRSQNRVPLLEGLPGTNSSFYSPPPLMRHAGRLGQ 520 530 540 550 560 570 720 730 740 mKIAA2 RQMRRCPSVLFCLTPRQGGHRATQGRIRV ::::::::::::::::::::::::::::: gi|118 RQMRRCPSVLFCLTPRQGGHRATQGRIRV 580 590 >>gi|149042171|gb|EDL95878.1| rCG36266 [Rattus norvegicu (601 aa) initn: 2182 init1: 2182 opt: 3693 Z-score: 3305.8 bits: 622.0 E(): 2e-175 Smith-Waterman score: 3693; 90.713% identity (96.683% similar) in 603 aa overlap (147-745:1-601) 120 130 140 150 160 170 mKIAA2 AHLLISASSCTPHNSLPPSAQHSKPQELVTMSEAAGNLNSLRLANVALREELNALRGENV :::::::::::::::::::::::::::::: gi|149 MSEAAGNLNSLRLANVALREELNALRGENV 10 20 30 180 190 200 210 220 230 mKIAA2 QLGLQLGRALAEVNSLRGNVSSYIRWPMPIVPVLAEENFEFLLNETDPTPEEEEEEEEE- :::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::: gi|149 QLGLQLGRALAEVNSLRGNVSSYVRWPVPIVPVLAEENFEFLLNETDPTPEEEEEEEEEE 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA2 --VPFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHSPMLKEPTF :::::::::::::::::::::::::::::::::::::::::: ::::::::: :::: gi|149 EEVPFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSLSQPELHSPMSKEPTV 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA2 EFLLPPLERPDIEPFSGDPVYLAEFLMQLETFIADHEDHFPGGAERVAFLISFFTGEARD :::::::::::::::::::::::::::::::::::::.::::::.::::::::::::::. gi|149 EFLLPPLERPDIEPFSGDPVYLAEFLMQLETFIADHEEHFPGGADRVAFLISFFTGEARE 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA2 WAISVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNCTLGSYADAFQFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 WAISVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNCTLGSYADAFQFL 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA2 AQFLSWDDCRLQNQFLKGLSEIFRKELLWSTEVADLDELILECVKIERKVRVPKTASLTG :::::::::::::::::::::.::::::::::.::::::::::..::::::::: ::: . gi|149 AQFLSWDDCRLQNQFLKGLSEFFRKELLWSTEMADLDELILECIEIERKVRVPKPASLPA 280 290 300 310 320 330 480 490 500 510 520 530 mKIAA2 VQNSCCPFALIPNEDENEGVEFYSENEGEGEEAGGYRLYLKDQRQHMTAFPQEMREEEEE ::::::::.:: :::::::: :::::::..:::::..:::::.:.:: :::.:::.:::. gi|149 VQNSCCPFTLISNEDENEGVAFYSENEGDSEEAGGHELYLKDHRKHMKAFPEEMRDEEED 340 350 360 370 380 390 540 550 560 570 580 590 mKIAA2 MRKEEDEMEDEEDEDEDEDYEFEEEDEDDDDEEEEEEEEEEEDKEEEM-KNEDSDENKYE :::::.::::::::::: :: ::::::....:.:::::::::::::: ::::::::::: gi|149 MRKEEEEMEDEEDEDED--YEDEEEDEDEEEDEDEEEEEEEEDKEEEMMKNEDSDENKYE 400 410 420 430 440 600 610 620 630 640 650 mKIAA2 EEDEVIVRVLEPEQEQEREEIEHEHVYVHEHIHAHVHTLAAHHHGLHGELMVMDEPVLVD :.::::::::. :::::::::::::::::::::::.:.:::::::::::::::::::::: gi|149 EDDEVIVRVLDSEQEQEREEIEHEHVYVHEHIHAHMHALAAHHHGLHGELMVMDEPVLVD 450 460 470 480 490 500 660 670 680 690 700 710 mKIAA2 TSTQTISSAIGYHAENYLGVSPSVMHSSRQRSQNRVPLLEGLPGTNSSFYSPPPLMRHAG :::::::::::::::::::::: .: :.:::.::::::::::::::::::: :::.:::: gi|149 TSTQTISSAIGYHAENYLGVSPPIMPSGRQRNQNRVPLLEGLPGTNSSFYSSPPLIRHAG 510 520 530 540 550 560 720 730 740 mKIAA2 RLGQRQMRRCPSVLFCLTPRQGGHRATQGRIRV :::.::::: :::::::.::::::::::::::: gi|149 RLGHRQMRRRPSVLFCLSPRQGGHRATQGRIRV 570 580 590 600 >>gi|74007773|ref|XP_549073.2| PREDICTED: similar to ret (752 aa) initn: 1503 init1: 1503 opt: 2060 Z-score: 1845.9 bits: 352.2 E(): 4.1e-94 Smith-Waterman score: 2445; 57.462% identity (73.919% similar) in 717 aa overlap (43-745:74-752) 20 30 40 50 60 70 mKIAA2 PEGPPLRGARVAELKRREGSLSARFFLDRSCRSPFPPTLPASVGVTSASVSSVSCACRLQ : : . ..: .:: : . . gi|740 EESIRIGGWKTEEGLLGLEKRPQQDTLCTVCSSVYSKGTRHGIGDEESSVYCVLGSPFGS 50 60 70 80 90 100 80 90 100 110 120 mKIAA2 VPSCCLLSLRPLPRGNASRTEPLWVWPGLACA---------GSPCRRTLVSS--HAHLLI . . .::: : . . . :: :.:: : : .:. .. : : gi|740 AAAHLACGLRPQPPSLSVPCNRLWR---LSCASRSSSSTLGGLPEERNTFTGCRHDDLEW 110 120 130 140 150 160 130 140 150 160 170 mKIAA2 SASSCTPHNSLPPSAQ-HSKPQ--ELVTMSEAAGNLNSLRLANVALREELNALRGENVQL ... . : . . .:.:. ::. ::::::::::::.::::::::::::::::..: gi|740 AVAVAFSRPELAAAREGESQPRAPELILMSEAAGNLNSLRMANVALREELNALRGENANL 170 180 190 200 210 220 180 190 200 210 220 230 mKIAA2 GLQLGRALAEVNSLRGNVSSYIRWPMPIVPVLAEENFEFLLNETDPTPEEEEEEEEEVPF :::::::::::::::::::::::::.:.::::::::::: :.: : .:: : .:: gi|740 GLQLGRALAEVNSLRGNVSSYIRWPVPVVPVLAEENFEFPLSEIDAVPEGE------LPF 230 240 250 260 270 240 250 260 270 280 290 mKIAA2 LCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHSPMLKEPTFEFLLP :::::::..:::.::.:::.:.:: .. :. ::: : : : : :: . :: gi|740 LCWPPPRAEPEYASDELLISVIQDCSTSDAPVDPPPLPIPPPLALPPPPAKELPPQPPLP 280 290 300 310 320 330 300 310 320 330 340 350 mKIAA2 PLERPDIEPFSGDPVYLAEFLMQLETFIADHEDHFPGGAERVAFLISFFTGEARDWAISV :::::..::::::::::::::::::::::::::::::::::::::::::.:::.:::::: gi|740 PLERPELEPFSGDPVYLAEFLMQLETFIADHEDHFPGGAERVAFLISFFAGEAKDWAISV 340 350 360 370 380 390 360 370 380 390 400 410 mKIAA2 TQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNCTLGSYADAFQFLAQFLS :.::: :.::::::::::::::::::: ::::::::::::.:::::::::::::::::: gi|740 TREGSPLRANFPRFLDEIRKEFCGPIPPSVAKKAIRKLKQGDCTLGSYADAFQFLAQFLS 400 410 420 430 440 450 420 430 440 450 460 470 mKIAA2 WDDCRLQNQFLKGLSEIFRKELLWSTEVADLDELILECVKIERKVRVPKTASLTGVQNSC ::::::::::::::::.::::::::::.:::::::::::.::::::::: : ::.: gi|740 WDDCRLQNQFLKGLSEFFRKELLWSTEMADLDELILECVEIERKVRVPKPIPLPGVRNIF 460 470 480 490 500 510 480 490 500 510 520 530 mKIAA2 CPFALIPNEDENEGVEFYSENEGEGEEAGGYRLYLKDQRQHMTAFPQEMREEEEEMRKEE ::: ::.:... :.::. : ::. ::: ..::..: :. :: :::::. .::: gi|740 FPFAADPNNDDSDDEEYYSD---EDEETRRRRLYDREQRRRMRAIQQEAREEEEKRKKEE 520 530 540 550 560 570 540 550 560 570 580 590 mKIAA2 DEMEDEEDEDEDEDYEFEEEDEDDDDEEEEEEEEEEEDKEEEMKNEDSDENKYEEEDEVI .. . .:. . .. :....... . ....::.:::: :.: :: :::: :. . gi|740 EKRKKQEEMRKKQQEEMRKKQQE--EMRKKQEEKEEEDDEDE---EDEDENKGERLGPLP 580 590 600 610 620 600 610 620 630 640 650 mKIAA2 VRVLEPEQEQEREEIEHEHVYVHEHIHAHVHTLAAHHHGLHGELMVMDEPVLVDTSTQTI ::. .:: : : : : .. : :.: : ::... .:.:: gi|740 ----EPDPDQE-PEPEPEPESEDE----------TQDDDLD-EMMEM-EPTVAHASSQTT 630 640 650 660 660 670 680 690 700 710 mKIAA2 SSAIGYHAENYLGVSPSVMHSSRQRSQNRVPLLEGLPGTNSSFYSPPPLMRHAGRLGQRQ :.. ::.: .:: ... ::.:.::::::::::::::: ::: :::.:.:::::::: gi|740 ----GFYHENFLDASPPIIQPSRRRNQNRVPLLEGLPGTNSPFYSSPPLIRRAGRLGQRQ 670 680 690 700 710 720 720 730 740 mKIAA2 MRRCPSVLFCLTPRQGGHRATQGRIRV .:: : ::: ::::::::::..::::: gi|740 IRRRPPVLFRLTPRQGGHRAARGRIRV 730 740 750 >>gi|13874446|dbj|BAB46855.1| hypothetical protein [Maca (400 aa) initn: 1102 init1: 1102 opt: 1312 Z-score: 1181.1 bits: 228.3 E(): 4.4e-57 Smith-Waterman score: 1736; 65.023% identity (81.455% similar) in 426 aa overlap (320-745:1-400) 290 300 310 320 330 340 mKIAA2 EPTFEFLLPPLERPDIEPFSGDPVYLAEFLMQLETFIADHEDHFPGGAERVAFLISFFTG :::::::::::::::::::::::::::::: gi|138 MQLETFIADHEDHFPGGAERVAFLISFFTG 10 20 30 350 360 370 380 390 400 mKIAA2 EARDWAISVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNCTLGSYADA ::.::::::::::: ::::::::::::::::::::: :::::::::::::.::::::::: gi|138 EAKDWAISVTQEGSPLHANFPRFLDEIRKEFCGPIPPRVAKKAIRKLKQGHCTLGSYADA 40 50 60 70 80 90 410 420 430 440 450 460 mKIAA2 FQFLAQFLSWDDCRLQNQFLKGLSEIFRKELLWSTEVADLDELILECVKIERKVRVPKTA :::::::::::::.:::::::::::.::::::::::.:::::::::::.::::::::: gi|138 FQFLAQFLSWDDCHLQNQFLKGLSEFFRKELLWSTEMADLDELILECVEIERKVRVPKPI 100 110 120 130 140 150 470 480 490 500 510 520 mKIAA2 SLTGVQNSCCPFALIPNEDENEGVEFYSENEGEGEEAGGYRLYLKDQRQHMTAFPQEMRE : ::.: ::: :::.:.: :.:::.: .:: .::. ::::..: :: :::.: gi|138 PLPGVRNILFPFA--PNEEESEDEEYYSEDED--QEACRHRLHPKDQRNRMRAFQQEMKE 160 170 180 190 200 530 540 550 560 570 580 mKIAA2 EEEEMRKEEDEMEDEEDEDEDEDYEFEEEDEDDDDEEEEEEEEEEEDKEEEMKNEDSDEN .::: :.:.::. ::.: :.:. :.....:... ....::: : .:.:.: .::. .. gi|138 KEEEEMKKEEEMKKEEEEKEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDE--DEDGGQK 210 220 230 240 250 260 590 600 610 620 630 640 mKIAA2 KYEEEDEVIVRVLEPEQEQEREEIEHEHVYVHEHIHAHVHTLAAHHHGLHGELMVMDEPV .: .. :: :. :.:.: . :. : ::: : ::. gi|138 PEREPQQ------EPGTEETYGEVEEEPLD------------EAQDDDLD-ELMEM-EPT 270 280 290 300 650 660 670 680 690 700 mKIAA2 LVDTSTQTISSAIGYHAENYLGVSPSVMHSSRQRSQNRVPLLEGLPGTNSSFYSPPPLMR .: .:.:: . . ::::::.::.:: ... ::.:.::::::::::::::: ::: :::.: gi|138 FVHASSQTSGPTNGYHAENFLGASPPIIQPSRRRNQNRVPLLEGLPGTNSPFYSSPPLIR 310 320 330 340 350 360 710 720 730 740 mKIAA2 HAGRLGQRQMRRCPSVLFCLTPRQGGHRATQGRIRV ..:::::::.:: : ::: ::::::::::..::::: gi|138 RTGRLGQRQVRRRPPVLFRLTPRQGGHRAARGRIRV 370 380 390 400 >>gi|50949517|emb|CAB94872.2| hypothetical protein [Homo (370 aa) initn: 1084 init1: 961 opt: 1110 Z-score: 1001.0 bits: 194.9 E(): 4.7e-47 Smith-Waterman score: 1513; 61.421% identity (79.695% similar) in 394 aa overlap (352-745:1-370) 330 340 350 360 370 380 mKIAA2 LETFIADHEDHFPGGAERVAFLISFFTGEARDWAISVTQEGSSLHANFPRFLDEIRKEFC .::::::::::: ::::::::::::::::: gi|509 KDWAISVTQEGSPLHANFPRFLDEIRKEFC 10 20 30 390 400 410 420 430 440 mKIAA2 GPIPSRVAKKAIRKLKQGNCTLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEIFRKELL :::: :::::::::::::.::::::::::::::::::::::::::::::::::.:::::: gi|509 GPIPPRVAKKAIRKLKQGHCTLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEFFRKELL 40 50 60 70 80 90 450 460 470 480 490 500 mKIAA2 WSTEVADLDELILECVKIERKVRVPKTASLTGVQNSCCPFALIPNEDENEGVEFYSENEG ::::.:::::::::::.::::::::: : ::.: ::: :::.:.: :.:::.: gi|509 WSTEMADLDELILECVEIERKVRVPKPIPLPGVRNIIFPFAPSPNEEESEDEEYYSEDED 100 110 120 130 140 150 510 520 530 540 550 560 mKIAA2 EGEEAGGYRLYLKDQRQHMTAFPQEMREEEEEMRKEEDEMEDEEDEDEDEDYEFEEEDED . :: .::. ::::..: :: :::.:.::: :.:.::. .:...:.:. :.....:. gi|509 Q--EARRHRLHSKDQRKRMRAFQQEMKEKEEEEMKKEEEMKKKEEKEEEEEEEMKQKEEE 160 170 180 190 200 570 580 590 600 610 620 mKIAA2 DDDEEEEEEEEEEEDKEEEMKNEDSDENKYEEEDEVIVRVLEPEQEQEREEIEHEHVYVH .. ....::: : .:.:.: .::. .. : .. .: :. :.:.: . gi|509 EEIRNKNEEEGESKDEEDE--DEDGGQKPEGEPQQ------DPGTEETYGEVEEEPLD-- 210 220 230 240 250 630 640 650 660 670 680 mKIAA2 EHIHAHVHTLAAHHHGLHGELMVMDEPVLVDTSTQTISSAIGYHAENYLGVSPSVMHSSR :. : ::: : ::..: .:.:: . . ::::::.::.:: ... :: gi|509 ----------EAQDDDLD-ELMEM-EPTFVHASSQTSGPTSGYHAENFLGASPPIIQPSR 260 270 280 290 300 690 700 710 720 730 740 mKIAA2 QRSQNRVPLLEGLPGTNSSFYSPPPLMRHAGRLGQRQMRRCPSVLFCLTPRQGGHRATQG .:.::::::::::::::: ::: : :.:..:::::::.:: : ::: ::::::::::..: gi|509 RRNQNRVPLLEGLPGTNSPFYSSPQLIRRTGRLGQRQVRRRPPVLFRLTPRQGGHRAARG 310 320 330 340 350 360 mKIAA2 RIRV :::: gi|509 RIRV 370 >>gi|157954422|ref|NP_001103285.1| paternally expressed (405 aa) initn: 359 init1: 278 opt: 357 Z-score: 327.9 bits: 70.5 E(): 1.5e-09 Smith-Waterman score: 357; 29.478% identity (58.209% similar) in 268 aa overlap (256-518:108-366) 230 240 250 260 270 280 mKIAA2 PEEEEEEEEEVPFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHS : : :: :. . . . :.: . : gi|157 NLGERRREDLSEEINNLREKVMKQSEENNNLQNQVQKLTEENTTLREQVEPTPEEEEDDI 80 90 100 110 120 130 290 300 310 320 330 340 mKIAA2 PMLKEPTFEFLLPPLER--PDIEP--FSGDPVYLAEFLMQLETFIADHEDHFPGGAERVA . . :.:. :. : :.:.: .:. :. : . :. : :: gi|157 ELCGAAAAAAPASPIEEECPEDLPEKFDGNPDMLVPFMSQCQLFMEKSTRDFSVDRVRVC 140 150 160 170 180 190 350 360 370 380 390 400 mKIAA2 FLISFFTGEARDWAISVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNC :. :..::.: :: . ... : :.: :. :... : : ..::. ::.:.:: gi|157 FVTSMMTGRAARWASAKLERSHYLMHNYPAFMTEMKHVFEDPQRREAAKRKIRRLRQGMG 200 210 220 230 240 250 410 420 430 440 450 460 mKIAA2 TLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEIFRKELLWSTEVA-DLDELILECVKIE .. .:..:::..:: :.:.. : .:. .:::. .. :: ::: .:. :: .:..:: gi|157 SVVDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQAELA-RLEVAKSLSALIGQCIHIE 260 270 280 290 300 310 470 480 490 500 510 520 mKIAA2 RKVRVPKTASLTGVQNSCCPFALIPNEDENEGVEFYSENEGEGEEAGGYRLYLKDQRQHM : :. ..:. .. : ::. . .:. .... : .:: :. : .... gi|157 R--RLARAAATRKPRSP--PRALVAPHVNNH----HNHQVDPTEPVGGARMRLTQEEKER 320 330 340 350 360 530 540 550 560 570 580 mKIAA2 TAFPQEMREEEEEMRKEEDEMEDEEDEDEDEDYEFEEEDEDDDDEEEEEEEEEEEDKEEE gi|157 RRKLNLCLYCGNGGHYADNCPAKASKASPAGNSPAPL 370 380 390 400 >>gi|73976337|ref|XP_539424.2| PREDICTED: similar to pat (379 aa) initn: 351 init1: 277 opt: 354 Z-score: 325.6 bits: 69.9 E(): 2e-09 Smith-Waterman score: 360; 31.852% identity (58.148% similar) in 270 aa overlap (256-518:84-340) 230 240 250 260 270 280 mKIAA2 PEEEEEEEEEVPFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHS : : :: :. . : . :.: : : . gi|739 NLAERRRDDLSEEINNLREKVMKQSEENNNLQNQVQKLTEENTSLREQVEPAP-QDEEDD 60 70 80 90 100 110 290 300 310 320 330 340 mKIAA2 PMLKEPTFEFLLP-PLER--PDIEP--FSGDPVYLAEFLMQLETFIADHEDHFPGGAERV :. . : :::. :: : :.:.: .:. :. : . :. : :: gi|739 LELRGAAAAAAPPTPLEEECPDDLPEKFDGNPDMLVPFMAQCQLFMEKSTRDFSVDRVRV 120 130 140 150 160 170 350 360 370 380 390 400 mKIAA2 AFLISFFTGEARDWAISVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGN :. :..::.: :: . ... : :.: :. :... : : ..::. ::.:.:: gi|739 CFVTSMMTGRAARWASAKLERSHYLMHNYPAFMTEMKHVFEDPQRREAAKRKIRRLRQGM 180 190 200 210 220 230 410 420 430 440 450 mKIAA2 CTLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEIFRKELLWSTEVA-DLDELILECVKI .. .:..:::..:: :.:.. : .:. .:::. .. :: ::: .:. :: .:..: gi|739 GSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQAELS-RLEVAKSLSALIGQCIHI 240 250 260 270 280 290 460 470 480 490 500 510 mKIAA2 ERKVRVPKTASLTGVQNSCCPFALI-PNEDENEGVEFYSENEGEGEEAGGYRLYLKDQRQ :: :. ..:. .. : ::. :. .. :. : .:: :. : .... gi|739 ER--RLARAAAARKPRSP--PRALVLPHITSHHQVD-------PTEPVGGARMRLTQEEK 300 310 320 330 340 520 530 540 550 560 570 mKIAA2 HMTAFPQEMREEEEEMRKEEDEMEDEEDEDEDEDYEFEEEDEDDDDEEEEEEEEEEEDKE gi|739 ERRRKLNLCLYCGNGGHYADNCPAKASKASPAGNSPAPL 350 360 370 >>gi|187761320|ref|NP_001120682.1| paternally expressed (788 aa) initn: 359 init1: 278 opt: 357 Z-score: 324.4 bits: 70.8 E(): 2.3e-09 Smith-Waterman score: 357; 29.478% identity (58.209% similar) in 268 aa overlap (256-518:108-366) 230 240 250 260 270 280 mKIAA2 PEEEEEEEEEVPFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHS : : :: :. . . . :.: . : gi|187 NLGERRREDLSEEINNLREKVMKQSEENNNLQNQVQKLTEENTTLREQVEPTPEEEEDDI 80 90 100 110 120 130 290 300 310 320 330 340 mKIAA2 PMLKEPTFEFLLPPLER--PDIEP--FSGDPVYLAEFLMQLETFIADHEDHFPGGAERVA . . :.:. :. : :.:.: .:. :. : . :. : :: gi|187 ELCGAAAAAAPASPIEEECPEDLPEKFDGNPDMLVPFMSQCQLFMEKSTRDFSVDRVRVC 140 150 160 170 180 190 350 360 370 380 390 400 mKIAA2 FLISFFTGEARDWAISVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNC :. :..::.: :: . ... : :.: :. :... : : ..::. ::.:.:: gi|187 FVTSMMTGRAARWASAKLERSHYLMHNYPAFMTEMKHVFEDPQRREAAKRKIRRLRQGMG 200 210 220 230 240 250 410 420 430 440 450 460 mKIAA2 TLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEIFRKELLWSTEVA-DLDELILECVKIE .. .:..:::..:: :.:.. : .:. .:::. .. :: ::: .:. :: .:..:: gi|187 SVVDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQAELA-RLEVAKSLSALIGQCIHIE 260 270 280 290 300 310 470 480 490 500 510 520 mKIAA2 RKVRVPKTASLTGVQNSCCPFALIPNEDENEGVEFYSENEGEGEEAGGYRLYLKDQRQHM : :. ..:. .. : ::. . .:. .... : .:: :. : .... gi|187 R--RLARAAATRKPRSP--PRALVAPHVNNH----HNHQVDPTEPVGGARMRLTQEEKER 320 330 340 350 360 530 540 550 560 570 580 mKIAA2 TAFPQEMREEEEEMRKEEDEMEDEEDEDEDEDYEFEEEDEDDDDEEEEEEEEEEEDKEEE gi|187 RRKLNLCLYCGNGGHYADNCPAKASKASPAGKLPGPAVEGPSATGPELIRSPQDDAASSP 370 380 390 400 410 420 >>gi|109069256|ref|XP_001085478.1| PREDICTED: similar to (325 aa) initn: 315 init1: 276 opt: 350 Z-score: 322.9 bits: 69.2 E(): 2.8e-09 Smith-Waterman score: 356; 30.112% identity (57.993% similar) in 269 aa overlap (256-518:30-286) 230 240 250 260 270 280 mKIAA2 PEEEEEEEEEVPFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHS : : :: :. . . . :.: . . gi|109 MTERRRDELSEEINNLREKVIKQSEENSNLQNQVQKLTEENTTLREQVEPTPEDDDDDI 10 20 30 40 50 290 300 310 320 330 340 mKIAA2 PMLKEPTFEFLLPPLER--PDIEP--FSGDPVYLAEFLMQLETFIADHEDHFPGGAERVA . . ::.:. :. : :.:.: .:: :. : . :. : :: gi|109 ELRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVC 60 70 80 90 100 110 350 360 370 380 390 400 mKIAA2 FLISFFTGEARDWAISVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNC :. :..::.: :: . ... : :.: :. :... : : ..::. ::.:.:: gi|109 FVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREAAKRKIRRLRQGMG 120 130 140 150 160 170 410 420 430 440 450 460 mKIAA2 TLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEIFRKELLWSTEVA-DLDELILECVKIE .. .:..:::..:: :.:.. : .:. .:::. ...:: ::: .:. :: .:..:: gi|109 SVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELS-HLEVAKSLSALIGQCIHIE 180 190 200 210 220 230 470 480 490 500 510 mKIAA2 RKVRVPKTASLTGVQNSCCPFALI-PNEDENEGVEFYSENEGEGEEAGGYRLYLKDQRQH : :. ..:. .. : ::. :. .. :. : .:: :. : .... gi|109 R--RLARAAAARKPRSP--PRALVLPHVASHHQVD-------PTEPVGGARMRLTQEEKE 240 250 260 270 280 520 530 540 550 560 570 mKIAA2 MTAFPQEMREEEEEMRKEEDEMEDEEDEDEDEDYEFEEEDEDDDDEEEEEEEEEEEDKEE gi|109 RRRKLNLCLYCGTGGHYADNCPAKASKSSPAGNSPAPL 290 300 310 320 >>gi|13810537|dbj|BAB43951.1| paternally expressed gene (325 aa) initn: 320 init1: 281 opt: 349 Z-score: 322.0 bits: 69.0 E(): 3.2e-09 Smith-Waterman score: 354; 30.189% identity (58.113% similar) in 265 aa overlap (260-518:34-286) 230 240 250 260 270 280 mKIAA2 EEEEEEVPFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHSPMLK :: :. . . . :.: . . . gi|138 RRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIELRG 10 20 30 40 50 60 290 300 310 320 330 340 mKIAA2 EPTFEFLLPPLER--PDIEP--FSGDPVYLAEFLMQLETFIADHEDHFPGGAERVAFLIS . ::.:. :. : :.:.: .:: :. : . :. : :: :. : gi|138 AAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTS 70 80 90 100 110 120 350 360 370 380 390 400 mKIAA2 FFTGEARDWAISVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNCTLGS ..::.: :: . ... : :.: :. :... : : .:::. ::.:.:: .. . gi|138 MMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGSVID 130 140 150 160 170 180 410 420 430 440 450 460 mKIAA2 YADAFQFLAQFLSWDDCRLQNQFLKGLSEIFRKELLWSTEVA-DLDELILECVKIERKVR :..:::..:: :.:.. : .:. .:::. ...:: ::: .:. :: .:..::: : gi|138 YSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELS-HLEVAKSLSALIGQCIHIER--R 190 200 210 220 230 240 470 480 490 500 510 520 mKIAA2 VPKTASLTGVQNSCCPFALI-PNEDENEGVEFYSENEGEGEEAGGYRLYLKDQRQHMTAF . ..:. .. : ::. :. .. :. : .:: :. : .... gi|138 LARAAAARKPRSP--PRALVLPHIASHHQVD-------PTEPVGGARMRLTQEEKERRRK 250 260 270 280 290 530 540 550 560 570 580 mKIAA2 PQEMREEEEEMRKEEDEMEDEEDEDEDEDYEFEEEDEDDDDEEEEEEEEEEEDKEEEMKN gi|138 LNLCLYCGTGGHYADNCPAKASKSSPAGNSPAPL 300 310 320 745 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 17:45:47 2009 done: Mon Mar 16 17:53:58 2009 Total Scan time: 1078.610 Total Display time: 0.160 Function used was FASTA [version 34.26.5 April 26, 2007]