FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00021.ptfa, 460 aa
 vs ./tmplib.26680 library

1768557 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.8291+/-0.00349; mu= 17.4483+/- 0.233
 mean_var=61.1851+/-13.883, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1640

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1382  ( 571 res)   mpm06308                   ( 571)  152   45 1.7e-05


>>mKIAA1382  ( 571 res)   mpm06308                        (571 aa)
 initn:  78 init1:  78 opt: 152  Z-score: 190.9  bits: 44.9 E(): 1.7e-05
Smith-Waterman score: 156;  18.892% identity (20.661% ungapped) in 397 aa overlap (34-412:149-529)

            10        20        30        40        50        60   
mFLJ00 PALPHSLEMAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLIFV
                                     : :::.: : .  :.:..:  . ..:: ::
mKIAA1 LLESNLGKKKYETDFHPGTTSFGMSVFNLSNAIVGSGILGLSYAMANTGIALFIILLTFV
      120       130       140       150       160       170        

            70        80        90       100           110         
mFLJ00 GFMSFVTTTFAMEAMAAANAQLRWKRMETHKEEDDEDSSTASDS----DLLSQDNYERAE
       ...:. .. . ... :  ...: ....  ::      . .:: :    .. ....:    
mKIAA1 SIFSLYSVHLLLKT-ANEGGSLLYEQL-GHKAYGLAGKLAASGSITMQNIGAMSSYLFIV
      180       190        200        210       220       230      

     120       130       140           150        160       170    
mFLJ00 KRPILSVQRRSSANLFEITDRVEM----GQMASMFFNKVGV-NLFYFCIITYLYGDLAIY
       :  .  : .     :..: :   .    :..  .. . : .  :  .  . ::    .. 
mKIAA1 KYELPLVIK----ALMNIEDTNGLWYLNGDYLVLLVSLVLILPLSLLRNLGYLGYTSGLS
        240           250       260       270       280       290  

          180       190       200        210       220       230   
mFLJ00 AAAVPVSLMQVTCSVSGNDSCGVDTDARYNDT-DAFAIMIVLALVRIGKGQGEGHPPLAN
          .   :. : :. . .  : :..    :.: ..   . .:::.  . ..   .:    
mKIAA1 LLCMIFFLIVVICK-KFQIPCPVEAALVANETVNGTFTQAALALAFNSTADDACRPRYFI
            300        310       320       330       340       350 

           240         250       260            270       280      
mFLJ00 FLGVQNLFGVCV--YSFMCQHSLPSLITPISSKR-----HITRLLFLDYALILAFYGLLS
       : . :....: .  .::.:. ..  .   ..:.      ..... :. . :.  . .:..
mKIAA1 F-NSQTVYAVPILTFSFVCHPAVLPIYEELKSRSRRRMMNVSKISFFAMFLMYLLAALFG
              360       370       380       390       400       410

        290       300       310       320       330       340      
mFLJ00 FTAIFCFRGDSLMDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKT
       . ...    . :.  :.      ..::   . . . :  . ... . :..   .:..   
mKIAA1 YLTFYGHVESELLHTYS------EIVGTDILLLVVRLAVLVAVTLTVPVVIFPIRSSVTH
              420             430       440       450       460    

        350       360       370       380       390       400      
mFLJ00 LFHREGGTYPWVVDRVVFPTITLVPPILVAFCTHDLESLVAITGAYAGTGIQYVIP-AFL
       :.      . :.   ..  ::     .:: :    .... .. :: :.. . ...: :: 
mKIAA1 LLC-PTKEFSWLRHSIITVTILSFTNLLVIFVP-TIRDIFGFIGASAAAMLIFILPSAFY
           470       480       490        500       510       520  

         410       420       430       440       450       460
mFLJ00 VYLCRKDTQLTFGYGTVNKHRSPFRHTFWVAFVLLWAFSCFFFVTAYIVLKETQL
       . : .:.                                                
mKIAA1 IKLVKKEPMRSVQKIGALCFLLSGIVVMIGSMGLIVLDWVHDASAAGGH      
            530       540       550       560       570       




460 residues in 1 query   sequences
1768557 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:06:09 2006 done: Mon Mar 27 10:06:09 2006
 Scan time:  0.650 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]