FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4027.ptfa, 287 aa
 vs ./tmplib.26680 library

1768730 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.7622+/-0.00704; mu= 1.0033+/- 0.469
 mean_var=262.2716+/-63.942, 0's: 0 Z-trim: 1  B-trim: 2 in 1/35
 Lambda= 0.0792

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0206  ( 236 res)   mpm06051                   ( 236)  253   41 7.5e-05


>>mKIAA0206  ( 236 res)   mpm06051                        (236 aa)
 initn: 167 init1: 102 opt: 253  Z-score: 179.4  bits: 40.8 E(): 7.5e-05
Smith-Waterman score: 291;  25.726% identity (29.245% ungapped) in 241 aa overlap (38-257:1-233)

        10        20        30        40        50        60       
mKIAA4 PSRLGPAPAPRPVVSPGPAAPCQPLPPAPPPGTMLPSQEASKLYHEHYMRNSRAIGVLWA
                                     :. . :   . ..   : . . :..  ::.
mKIAA0                               PSGLQPRFPTVNINMCHVIVTCRSM--LWT
                                             10        20          

        70        80                  90         100          110  
mKIAA4 IFTICFAIINVVVFIQPYWV----------GDSVS--TPKPGYFGLFHYCVGSG---LAG
       ...:  :. ..:.:..  :.          ::  .  . .: :.:..  :. .     ..
mKIAA0 LLSIVVAFAELVAFMSADWLIGKAKTRSGSGDEQAGMNSEPHYLGIL--CIRTPAMQQVS
       30        40        50        60        70          80      

            120        130       140       150       160           
mKIAA4 RELTCRGSFT-DFSTIPSSAFKAAAFFVLLSMVLILGCITCFALFFFCNTA----TVYKI
       :.  : :... .:. : :. ..:.:.:. .. ..::  ..  ..: .:  .    .....
mKIAA0 RDTLC-GTYAKSFGEIASGFWQATAIFLAVG-IFILCVVALVSVFTMCVQSIMRKSIFNV
         90        100       110        120       130       140    

       170       180       190       200       210       220       
mKIAA4 CAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIG-ILN
       :. .: .:.: :.:: ...: ::  .   : ::  .. :. ::::. ::.  :  : .:.
mKIAA0 CGLLQGIAGLFLILGLILYPAGWGCQKAID-CGRYASPYKPGDCSLGWAFYTATGGTVLT
          150       160       170        180       190       200   

        230       240       250       260       270       280      
mKIAA4 ALILSFLAFVLGNRQTDLLQEELKQENKDFVGTTVSSVLRPGGDVSGWGVLPCPVAHTQG
        .   : : .    ..: .:::. .:.:..:                             
mKIAA0 FICAVFSAQAEIATSSDKVQEEI-EEGKNLVCLL                          
           210       220        230                                

        
mKIAA4 P




287 residues in 1 query   sequences
1768730 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:37 2006 done: Mon Mar 27 10:59:37 2006
 Scan time:  0.470 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]