FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4005.ptfa, 818 aa vs ./tmplib.26680 library 1768199 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 10.3162+/-0.00848; mu= -4.4948+/- 0.565 mean_var=396.8698+/-94.201, 0's: 0 Z-trim: 6 B-trim: 0 in 0/36 Lambda= 0.0644 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0298 ( 208 res) mbg08362 ( 208) 236 35 0.008 >>mKIAA0298 ( 208 res) mbg08362 (208 aa) initn: 141 init1: 126 opt: 236 Z-score: 143.1 bits: 35.4 E(): 0.008 Smith-Waterman score: 236; 40.909% identity (45.000% ungapped) in 110 aa overlap (370-475:40-143) 340 350 360 370 380 390 mKIAA4 GRPIKPPRKDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASA :.:. : .:: . . ::..:: : mKIAA0 TQPEMEYDCENARYGHPGVRVLPGLSMYDQKKCE---KLVLSLCCNSLSLPFHEPV--SP 10 20 30 40 50 60 400 410 420 430 440 450 mKIAA4 LGLHDYHDIIKHPMDLSTVKRKMENRD---YRDAQEFAADVRLMFSNCYKYNPPDHDVVA :. : :..:::.::::: ..::....: : .: ..:::::: :: :.: :: .:. mKIAA0 LARH-YYQIIKRPMDLSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAE 70 80 90 100 110 120 460 470 480 490 500 510 mKIAA4 MARKLQDVFEFRYAKM-PDEPLEPGPLPVSTALPPGLTKSSSESSSEESSSESSSEEEEE .: :. :: .. ::. mKIAA0 AGRCLEVFFEGWLKEIYPDKCFAQPQQEDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPK 130 140 150 160 170 180 818 residues in 1 query sequences 1768199 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:59:04 2006 done: Mon Mar 27 10:59:05 2006 Scan time: 0.960 Display time: 0.010 Function used was FASTA [version 3.4t11 Apr 17, 2002]