FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4005.ptfa, 818 aa
 vs ./tmplib.26680 library

1768199 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 10.3162+/-0.00848; mu= -4.4948+/- 0.565
 mean_var=396.8698+/-94.201, 0's: 0 Z-trim: 6  B-trim: 0 in 0/36
 Lambda= 0.0644

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0298  ( 208 res)   mbg08362                   ( 208)  236   35   0.008


>>mKIAA0298  ( 208 res)   mbg08362                        (208 aa)
 initn: 141 init1: 126 opt: 236  Z-score: 143.1  bits: 35.4 E(): 0.008
Smith-Waterman score: 236;  40.909% identity (45.000% ungapped) in 110 aa overlap (370-475:40-143)

     340       350       360       370       380       390         
mKIAA4 GRPIKPPRKDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASA
                                     :.:.   : .::    . . ::..::  : 
mKIAA0 TQPEMEYDCENARYGHPGVRVLPGLSMYDQKKCE---KLVLSLCCNSLSLPFHEPV--SP
      10        20        30        40           50        60      

     400       410       420          430       440       450      
mKIAA4 LGLHDYHDIIKHPMDLSTVKRKMENRD---YRDAQEFAADVRLMFSNCYKYNPPDHDVVA
       :. : :..:::.::::: ..::....:   :   .: ..:::::: :: :.: :: .:. 
mKIAA0 LARH-YYQIIKRPMDLSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAE
            70        80        90       100       110       120   

        460       470        480       490       500       510     
mKIAA4 MARKLQDVFEFRYAKM-PDEPLEPGPLPVSTALPPGLTKSSSESSSEESSSESSSEEEEE
        .: :.  ::    .. ::.                                        
mKIAA0 AGRCLEVFFEGWLKEIYPDKCFAQPQQEDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPK
           130       140       150       160       170       180   




818 residues in 1 query   sequences
1768199 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:04 2006 done: Mon Mar 27 10:59:05 2006
 Scan time:  0.960 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]