# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj27154.fasta.nr -Q ../query/mKIAA1163.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1163, 638 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7905791 sequences Expectation_n fit: rho(ln(x))= 5.4024+/-0.000192; mu= 12.5618+/- 0.011 mean_var=95.3144+/-18.421, 0's: 38 Z-trim: 123 B-trim: 112 in 1/65 Lambda= 0.131370 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|123122751|emb|CAM27258.1| adhesion molecule wit ( 626) 4232 812.5 0 gi|68052335|sp|Q80ZD8.1|AMGO1_MOUSE RecName: Full= ( 492) 3327 640.9 2.9e-181 gi|68051983|sp|Q80ZD7.1|AMGO1_RAT RecName: Full=Am ( 493) 3193 615.5 1.3e-173 gi|68052342|sp|Q86WK6.1|AMGO1_HUMAN RecName: Full= ( 493) 3016 582.0 1.6e-163 gi|26454838|gb|AAH40879.1| Adhesion molecule with ( 493) 3010 580.8 3.5e-163 gi|73959931|ref|XP_547241.2| PREDICTED: similar to ( 493) 3010 580.8 3.5e-163 gi|149708710|ref|XP_001494891.1| PREDICTED: simila ( 493) 3009 580.7 4e-163 gi|154426022|gb|AAI51606.1| AMIGO1 protein [Bos ta ( 493) 3004 579.7 7.7e-163 gi|126311541|ref|XP_001381944.1| PREDICTED: simila ( 493) 2525 488.9 1.6e-135 gi|123122753|emb|CAM27260.1| adhesion molecule wit ( 309) 1942 378.2 2.2e-102 gi|189522545|ref|XP_001924023.1| PREDICTED: si:ch2 ( 491) 1712 334.8 4e-89 gi|169146257|emb|CAQ14852.1| novel protein similar ( 490) 1707 333.9 7.7e-89 gi|47228771|emb|CAG07503.1| unnamed protein produc ( 505) 1627 318.7 2.9e-84 gi|47229631|emb|CAG06827.1| unnamed protein produc ( 488) 1332 262.8 1.9e-67 gi|157676677|emb|CAP07973.1| si:ch211-199o1.9 [Dan ( 368) 1274 251.7 3.2e-64 gi|112418608|gb|AAI21982.1| Adhesion molecule with ( 488) 978 195.7 3e-47 gi|169154896|emb|CAQ14854.1| novel protein similar ( 488) 772 156.7 1.7e-35 gi|148725834|emb|CAN88395.1| novel protein similar ( 486) 768 155.9 2.8e-35 gi|18606131|gb|AAH22907.1| Amigo1 protein [Mus mus ( 164) 747 151.5 2.1e-34 gi|76663289|ref|XP_592100.2| PREDICTED: adhesion m ( 521) 735 149.7 2.3e-33 gi|111120278|gb|ABH06324.1| amphoterin induced gen ( 387) 732 149.0 2.7e-33 gi|224093708|ref|XP_002196828.1| PREDICTED: adhesi ( 521) 717 146.3 2.4e-32 gi|68052306|sp|Q5R7M3.1|AMGO2_PONAB RecName: Full= ( 522) 716 146.1 2.8e-32 gi|50728248|ref|XP_416052.1| PREDICTED: similar to ( 521) 713 145.5 4.1e-32 gi|68052338|sp|Q86SJ2.1|AMGO2_HUMAN RecName: Full= ( 522) 713 145.5 4.1e-32 gi|193787207|dbj|BAG52413.1| unnamed protein produ ( 522) 713 145.5 4.1e-32 gi|125851929|ref|XP_695083.2| PREDICTED: similar t ( 483) 704 143.8 1.3e-31 gi|149714197|ref|XP_001489729.1| PREDICTED: adhesi ( 521) 704 143.8 1.3e-31 gi|73997063|ref|XP_543720.2| PREDICTED: similar to ( 565) 697 142.5 3.6e-31 gi|68052336|sp|Q80ZD9.1|AMGO2_MOUSE RecName: Full= ( 519) 694 141.9 5e-31 gi|68051979|sp|Q7TNJ4.1|AMGO2_RAT RecName: Full=Am ( 520) 685 140.2 1.6e-30 gi|29027428|gb|AAO48951.1| transmembrane protein A ( 520) 685 140.2 1.6e-30 gi|149523844|ref|XP_001511860.1| PREDICTED: simila ( 514) 671 137.6 1e-29 gi|68052343|sp|Q86WK7.1|AMGO3_HUMAN RecName: Full= ( 504) 666 136.6 1.9e-29 gi|72533373|gb|AAI01366.1| Adhesion molecule with ( 504) 666 136.6 1.9e-29 gi|73985503|ref|XP_850642.1| PREDICTED: similar to ( 876) 665 136.6 3.3e-29 gi|109039650|ref|XP_001107400.1| PREDICTED: simila ( 504) 656 134.7 7.2e-29 gi|68051982|sp|Q80ZD5.1|AMGO3_RAT RecName: Full=Am ( 508) 623 128.5 5.5e-27 gi|47223144|emb|CAG11279.1| unnamed protein produc ( 460) 614 126.7 1.7e-26 gi|68052349|sp|Q8C2S7.1|AMGO3_MOUSE RecName: Full= ( 508) 614 126.7 1.8e-26 gi|149496424|ref|XP_001513914.1| PREDICTED: simila ( 140) 554 114.8 1.9e-23 gi|26324562|dbj|BAC26035.1| unnamed protein produc ( 243) 511 106.9 8e-21 gi|33874717|gb|AAH14103.2| AMIGO2 protein [Homo sa ( 277) 492 103.4 1.1e-19 gi|33383063|dbj|BAC81188.1| alivin 1 [Homo sapiens ( 283) 492 103.4 1.1e-19 gi|210102681|gb|EEA50727.1| hypothetical protein B ( 480) 454 96.4 2.3e-17 gi|47205597|emb|CAF91400.1| unnamed protein produc ( 299) 440 93.5 1e-16 gi|66511266|ref|XP_394632.2| PREDICTED: similar to ( 777) 408 87.9 1.4e-14 gi|167865298|gb|EDS28681.1| kek1 [Culex quinquefas ( 832) 408 87.9 1.4e-14 gi|156552491|ref|XP_001602223.1| PREDICTED: simila ( 484) 405 87.1 1.5e-14 gi|108870857|gb|EAT35082.1| kek1 [Aedes aegypti] ( 876) 401 86.6 3.8e-14 >>gi|123122751|emb|CAM27258.1| adhesion molecule with Ig (626 aa) initn: 4232 init1: 4232 opt: 4232 Z-score: 4336.3 bits: 812.5 E(): 0 Smith-Waterman score: 4232; 100.000% identity (100.000% similar) in 626 aa overlap (13-638:1-626) 10 20 30 40 50 60 mKIAA1 RAGGRARGARCPHAAPSAGIAASPARRTASRLARGSGGGSRARWARVDGRGGPGAAAARV :::::::::::::::::::::::::::::::::::::::::::::::: gi|123 HAAPSAGIAASPARRTASRLARGSGGGSRARWARVDGRGGPGAAAARV 10 20 30 40 70 80 90 100 110 120 mKIAA1 DSAEPSKFLAGDVAGRGPLRTLGAVTGRPGRRGRGRPRRSSWTGHGLRRILAEQPVVKVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 DSAEPSKFLAGDVAGRGPLRTLGAVTGRPGRRGRGRPRRSSWTGHGLRRILAEQPVVKVT 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA1 LPYSTRTCRGDSLPDPVAFLALPSDTMQPQRDLRGLWLLLLSVFLLLFEVARAGRSVVSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LPYSTRTCRGDSLPDPVAFLALPSDTMQPQRDLRGLWLLLLSVFLLLFEVARAGRSVVSC 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA1 PANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 PANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA1 HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA1 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA1 GLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYK 350 360 370 380 390 400 430 440 450 460 470 480 mKIAA1 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVED 410 420 430 440 450 460 490 500 510 520 530 540 mKIAA1 GGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIYLYLTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIYLYLTP 470 480 490 500 510 520 550 560 570 580 590 600 mKIAA1 CRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPGQGQNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 CRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPGQGQNG 530 540 550 560 570 580 610 620 630 mKIAA1 KLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV :::::::::::::::::::::::::::::::::::::: gi|123 KLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV 590 600 610 620 >>gi|68052335|sp|Q80ZD8.1|AMGO1_MOUSE RecName: Full=Amph (492 aa) initn: 3327 init1: 3327 opt: 3327 Z-score: 3410.6 bits: 640.9 E(): 2.9e-181 Smith-Waterman score: 3327; 100.000% identity (100.000% similar) in 492 aa overlap (147-638:1-492) 120 130 140 150 160 170 mKIAA1 VKVTLPYSTRTCRGDSLPDPVAFLALPSDTMQPQRDLRGLWLLLLSVFLLLFEVARAGRS :::::::::::::::::::::::::::::: gi|680 MQPQRDLRGLWLLLLSVFLLLFEVARAGRS 10 20 30 180 190 200 210 220 230 mKIAA1 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHS 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA1 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA1 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA1 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNC 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA1 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV 280 290 300 310 320 330 480 490 500 510 520 530 mKIAA1 QVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 QVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIYL 340 350 360 370 380 390 540 550 560 570 580 590 mKIAA1 YLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 YLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPGQ 400 410 420 430 440 450 600 610 620 630 mKIAA1 GQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV :::::::::::::::::::::::::::::::::::::::::: gi|680 GQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV 460 470 480 490 >>gi|68051983|sp|Q80ZD7.1|AMGO1_RAT RecName: Full=Amphot (493 aa) initn: 3191 init1: 2059 opt: 3193 Z-score: 3273.4 bits: 615.5 E(): 1.3e-173 Smith-Waterman score: 3193; 95.132% identity (98.783% similar) in 493 aa overlap (147-638:1-493) 120 130 140 150 160 170 mKIAA1 VKVTLPYSTRTCRGDSLPDPVAFLALPSDTMQPQRDLRGLWLLLLSVFLLLFEVARAGRS ::::::::::::::::.:::::::::::: gi|680 MQPQRDLRGLWLLLLSLFLLLFEVARAGRP 10 20 30 180 190 200 210 220 230 mKIAA1 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHS ::::::::::::::::::::::::::::::.:::::::::::::::.::::::::::::: gi|680 VVSCPANCLCASNILSCSKQQLPNVPQSLPGYTALLDLSHNNLSRLKAEWTPTRLTNLHS 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA1 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|680 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSGLQALEVLLLYNNHIVVVD 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA1 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA ::::::::::::::::::.:::::.:::::.:.:::: :::::::::::::::::::::: gi|680 RNAFEDMAQLQKLYLSQNMISRFPLELIKDANRLPKLTLLDLSSNKLKKLPLTDLQKLPA 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA1 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNC :::::::::::::::::::::::::::::::::::::::::::.:::::::.:::::::: gi|680 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCVHSKKLHNVFSLDFFNC 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA1 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKK :::::::::::::::::: :::::::::::::.:::::::.::.::.:.: ..:.: ::. gi|680 SEYKESAWEAHLGDTLTITCDTKQQGMTKVWVTPSNEQVLNQGANGTVTVSEDGNLHFKE 280 290 300 310 320 330 480 490 500 510 520 530 mKIAA1 VQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 VQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY 340 350 360 370 380 390 540 550 560 570 580 590 mKIAA1 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG 400 410 420 430 440 450 600 610 620 630 mKIAA1 QGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV ::::::::::::::::::::::::::::::::::::::::::: gi|680 QGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV 460 470 480 490 >>gi|68052342|sp|Q86WK6.1|AMGO1_HUMAN RecName: Full=Amph (493 aa) initn: 3014 init1: 1888 opt: 3016 Z-score: 3092.1 bits: 582.0 E(): 1.6e-163 Smith-Waterman score: 3016; 89.452% identity (97.363% similar) in 493 aa overlap (147-638:1-493) 120 130 140 150 160 170 mKIAA1 VKVTLPYSTRTCRGDSLPDPVAFLALPSDTMQPQRDLRGLWLLLLSVFLLLFEVARAGRS :.:.:: ::::::: :. :::::::::::. gi|680 MHPHRDPRGLWLLLPSLSLLLFEVARAGRA 10 20 30 180 190 200 210 220 230 mKIAA1 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHS :::::: :::::::::::::::::::.:::::::::::::::::::::::::::::.::: gi|680 VVSCPAACLCASNILSCSKQQLPNVPHSLPSYTALLDLSHNNLSRLRAEWTPTRLTQLHS 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA1 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD :::::::::::::::: :::::::::::::.:.:::::::::::.:::::::::::..:: gi|680 LLLSHNHLNFISSEAFSPVPNLRYLDLSSNQLRTLDEFLFSDLQVLEVLLLYNNHIMAVD 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA1 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA : ::.:::::::::::::::::::.::.:.: ::::: ::::::::::.::: ::::::: gi|680 RCAFDDMAQLQKLYLSQNQISRFPLELVKEGAKLPKLTLLDLSSNKLKNLPLPDLQKLPA 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA1 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNC :.:::::::::::.:::.::::::::::::::::::::::::::.::::::.:.:.:.:: gi|680 WIKNGLYLHNNPLNCDCELYQLFSHWQYRQLSSVMDFQEDLYCMNSKKLHNVFNLSFLNC 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA1 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKK .:::: :::::::::: :.:::::::::::::.::::.::.. .::.::: ..:.:.:.. gi|680 GEYKERAWEAHLGDTLIIKCDTKQQGMTKVWVTPSNERVLDEVTNGTVSVSKDGSLLFQQ 280 290 300 310 320 330 480 490 500 510 520 530 mKIAA1 VQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: gi|680 VQVEDGGVYTCYAMGETFNETLSVELKVHNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY 340 350 360 370 380 390 540 550 560 570 580 590 mKIAA1 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG 400 410 420 430 440 450 600 610 620 630 mKIAA1 QGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV ::::::::::::::::::::::::::::::::::::::::::: gi|680 QGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV 460 470 480 490 >>gi|26454838|gb|AAH40879.1| Adhesion molecule with Ig-l (493 aa) initn: 3008 init1: 1888 opt: 3010 Z-score: 3085.9 bits: 580.8 E(): 3.5e-163 Smith-Waterman score: 3010; 89.249% identity (97.363% similar) in 493 aa overlap (147-638:1-493) 120 130 140 150 160 170 mKIAA1 VKVTLPYSTRTCRGDSLPDPVAFLALPSDTMQPQRDLRGLWLLLLSVFLLLFEVARAGRS :.:.:: ::::::: :. :::::::::::. gi|264 MHPHRDPRGLWLLLPSLSLLLFEVARAGRA 10 20 30 180 190 200 210 220 230 mKIAA1 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHS :::::: :::::::::::::::::::.:::::::::::::::::::::::::::::.::: gi|264 VVSCPAACLCASNILSCSKQQLPNVPHSLPSYTALLDLSHNNLSRLRAEWTPTRLTQLHS 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA1 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD :::::::::::::::: :::::::::::::.:.:::::::::::.:::::::::::..:: gi|264 LLLSHNHLNFISSEAFSPVPNLRYLDLSSNQLRTLDEFLFSDLQVLEVLLLYNNHIMAVD 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA1 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA : ::.:::::::::::::::::::.::.:.: ::::: ::::::::::.::: ::::::: gi|264 RCAFDDMAQLQKLYLSQNQISRFPLELVKEGAKLPKLTLLDLSSNKLKNLPLPDLQKLPA 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA1 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNC :.:::::::::::.:::.::::::::::::::::::::::::::.::::::.:.:.:.:: gi|264 WIKNGLYLHNNPLNCDCELYQLFSHWQYRQLSSVMDFQEDLYCMNSKKLHNVFNLSFLNC 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA1 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKK .:::: :::::::::: :.:::::::::::::.::::.::.. .::.::: ..:.:.:.. gi|264 GEYKERAWEAHLGDTLIIKCDTKQQGMTKVWVTPSNERVLDEVTNGTVSVSKDGSLLFQQ 280 290 300 310 320 330 480 490 500 510 520 530 mKIAA1 VQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: gi|264 VQVEDGGVYTCYAMGETFNETLSVELKVHNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY 340 350 360 370 380 390 540 550 560 570 580 590 mKIAA1 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|264 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG 400 410 420 430 440 450 600 610 620 630 mKIAA1 QGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV :::.::::::::::::::::::::::::::::::::::::::: gi|264 QGQSGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV 460 470 480 490 >>gi|73959931|ref|XP_547241.2| PREDICTED: similar to Amp (493 aa) initn: 3008 init1: 1891 opt: 3010 Z-score: 3085.9 bits: 580.8 E(): 3.5e-163 Smith-Waterman score: 3010; 89.452% identity (96.755% similar) in 493 aa overlap (147-638:1-493) 120 130 140 150 160 170 mKIAA1 VKVTLPYSTRTCRGDSLPDPVAFLALPSDTMQPQRDLRGLWLLLLSVFLLLFEVARAGRS :::::: :::::::::.: :::::::::: gi|739 MQPQRDPRGLWLLLLSLFPLLFEVARAGRP 10 20 30 180 190 200 210 220 230 mKIAA1 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHS :::::: :::::::::::::::::::.:::::::::::::::::::::::::::: .:.: gi|739 VVSCPAACLCASNILSCSKQQLPNVPHSLPSYTALLDLSHNNLSRLRAEWTPTRLIHLQS 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA1 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD :::::::::::::::: :::::::::::::.:.::::::::.::::::::::::::..:: gi|739 LLLSHNHLNFISSEAFSPVPNLRYLDLSSNQLRTLDEFLFSELQALEVLLLYNNHIMAVD 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA1 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA : ::.:::::::::::::::::::.::.:.: ::::: ::::::::::.::: ::::::: gi|739 RCAFDDMAQLQKLYLSQNQISRFPLELVKEGAKLPKLTLLDLSSNKLKNLPLPDLQKLPA 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA1 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNC :.:::::::::::.:::.:::::::::::::::::::::::::: ::::::.:.:.:.:: gi|739 WIKNGLYLHNNPLHCDCELYQLFSHWQYRQLSSVMDFQEDLYCMSSKKLHNVFNLSFLNC 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA1 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKK ::::: ::::::::::::.:::::::::::::.::::.::.. .:..:.: ..:.: :.. gi|739 SEYKERAWEAHLGDTLTIKCDTKQQGMTKVWVTPSNERVLDEVANSTVTVSKDGSLHFQQ 280 290 300 310 320 330 480 490 500 510 520 530 mKIAA1 VQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|739 VQVEDGGVYTCYAMGEAFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY 340 350 360 370 380 390 540 550 560 570 580 590 mKIAA1 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG 400 410 420 430 440 450 600 610 620 630 mKIAA1 QGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV :::::::::::::::::::::: :::::::::::::::::::: gi|739 QGQNGKLKPGNTLPVPEATGKGPRRMSDPESVSSVFSDTPIVV 460 470 480 490 >>gi|149708710|ref|XP_001494891.1| PREDICTED: similar to (493 aa) initn: 3007 init1: 1893 opt: 3009 Z-score: 3084.9 bits: 580.7 E(): 4e-163 Smith-Waterman score: 3009; 89.249% identity (96.755% similar) in 493 aa overlap (147-638:1-493) 120 130 140 150 160 170 mKIAA1 VKVTLPYSTRTCRGDSLPDPVAFLALPSDTMQPQRDLRGLWLLLLSVFLLLFEVARAGRS ::: ::::::::::: :::::::::::: gi|149 MQPPGDLRGLWLLLLSFFLLLFEVARAGRP 10 20 30 180 190 200 210 220 230 mKIAA1 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHS .::::: :::::::::::::::::::.:::::::::::::::::::::::::::::.::: gi|149 LVSCPAACLCASNILSCSKQQLPNVPHSLPSYTALLDLSHNNLSRLRAEWTPTRLTHLHS 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA1 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD :::::::::::::::: :::::::::::::.:.::::::::.::::::::::::::..:: gi|149 LLLSHNHLNFISSEAFSPVPNLRYLDLSSNQLRTLDEFLFSELQALEVLLLYNNHIMAVD 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA1 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA :.::.:::::::::::::::::::.::.:.: ::::: ::::::::::.::: ::::::: gi|149 RSAFDDMAQLQKLYLSQNQISRFPLELVKEGAKLPKLTLLDLSSNKLKNLPLPDLQKLPA 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA1 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNC :.:::::::::::.:::.:::::::::::::::::::::::::: ::::::.:.:.:.:: gi|149 WIKNGLYLHNNPLHCDCELYQLFSHWQYRQLSSVMDFQEDLYCMSSKKLHNVFNLSFLNC 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA1 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKK ::::: :::::::: :::.:::::::::::::.:.::.::.. .:..:.: ..:.: :.. gi|149 SEYKERAWEAHLGDPLTIKCDTKQQGMTKVWVTPNNERVLGEVANSTVTVSKDGSLHFEH 280 290 300 310 320 330 480 490 500 510 520 530 mKIAA1 VQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY ::::::::::::::::.::::::::::::::: ::::::::::::::::::::::::::: gi|149 VQVEDGGVYTCYAMGEAFNETLSVELKVYNFTSHGHHDTLNTAYTTLVGCILSVVLVLIY 340 350 360 370 380 390 540 550 560 570 580 590 mKIAA1 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG 400 410 420 430 440 450 600 610 620 630 mKIAA1 QGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV ::::::::::::::::::::::::::::::::::::::::::: gi|149 QGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV 460 470 480 490 >>gi|154426022|gb|AAI51606.1| AMIGO1 protein [Bos taurus (493 aa) initn: 3002 init1: 1903 opt: 3004 Z-score: 3079.8 bits: 579.7 E(): 7.7e-163 Smith-Waterman score: 3004; 88.844% identity (97.363% similar) in 493 aa overlap (147-638:1-493) 120 130 140 150 160 170 mKIAA1 VKVTLPYSTRTCRGDSLPDPVAFLALPSDTMQPQRDLRGLWLLLLSVFLLLFEVARAGRS :::: :::::::::::.:::::::::::: gi|154 MQPQGDLRGLWLLLLSLFLLLFEVARAGRP 10 20 30 180 190 200 210 220 230 mKIAA1 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHS ::::::.:::::::::::::::::::.:::::::::::::::::::::::::::::.::: gi|154 VVSCPASCLCASNILSCSKQQLPNVPHSLPSYTALLDLSHNNLSRLRAEWTPTRLTHLHS 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA1 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD :::::::::::::::: :::::::::::::.:.::::::::.::.:::::::::::..:: gi|154 LLLSHNHLNFISSEAFSPVPNLRYLDLSSNQLRTLDEFLFSELQVLEVLLLYNNHIMAVD 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA1 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA : ::.::.::::::::::::::::.::.:.: ::::: ::::::::::.::: ::::::: gi|154 RCAFDDMTQLQKLYLSQNQISRFPLELVKEGAKLPKLTLLDLSSNKLKNLPLPDLQKLPA 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA1 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNC :.:::::::::::.:::.:::::::::::::::::::::::::: ::::::.:.:.:.:: gi|154 WIKNGLYLHNNPLHCDCELYQLFSHWQYRQLSSVMDFQEDLYCMSSKKLHNVFNLSFLNC 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA1 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKK ::::: ::::::::.:::.:::::::::::::.::::.::.. .:..:.: ..:.: :.. gi|154 SEYKERAWEAHLGDSLTIKCDTKQQGMTKVWVTPSNERVLDEVANSTVTVSKDGSLHFQQ 280 290 300 310 320 330 480 490 500 510 520 530 mKIAA1 VQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY ::.: :::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|154 VQIEHGGVYTCYAMGEAFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY 340 350 360 370 380 390 540 550 560 570 580 590 mKIAA1 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::. gi|154 LYLTPCRCWCRGVEKPSSHQADSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPA 400 410 420 430 440 450 600 610 620 630 mKIAA1 QGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV ::::::::::::::::::::::::::::::::::::::::::: gi|154 QGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV 460 470 480 490 >>gi|126311541|ref|XP_001381944.1| PREDICTED: similar to (493 aa) initn: 1794 init1: 1549 opt: 2525 Z-score: 2589.1 bits: 488.9 E(): 1.6e-135 Smith-Waterman score: 2525; 75.101% identity (91.498% similar) in 494 aa overlap (147-638:1-493) 120 130 140 150 160 170 mKIAA1 VKVTLPYSTRTCRGDSLPDPVAFLALPSDTMQPQRDLRGLWLLLLSVFLLLFEVARAGRS :: : ::.::: ::.:: . :::.::: gi|126 MQHQSGCRGIWLLPLSLFLSSLGVARTGRS 10 20 30 180 190 200 210 220 230 mKIAA1 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHS ..:::..::::::::::.:. : ::::::: :::.::::::::..:::.:: .: .:.: gi|126 LLSCPTGCLCASNILSCTKRGLSNVPQSLPRYTAFLDLSHNNLTHLRAQWTTIHLIHLQS 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA1 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD :.::::::.:::.:::.:::.:::::::::::.:::: :::.:. :::::::.:.:: :: gi|126 LFLSHNHLHFISTEAFTPVPGLRYLDLSSNHLKTLDESLFSELKNLEVLLLYSNQIVEVD 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA1 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA :.::.::..:::::::::::.::::::.:: .:::.: :::::::::: :: .::: ::: gi|126 RSAFDDMVNLQKLYLSQNQIARFPVELVKDRSKLPSLTLLDLSSNKLKLLPTADLQDLPA 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA1 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNC :.::::::::: : :::.. .::.:::::::::: :::::::::.:::....:.. .:: gi|126 WMKNGLYLHNNSLSCDCEIQKLFTHWQYRQLSSVTDFQEDLYCMYSKKMYSVFNITTLNC 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA1 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKK ::.:: :.::.::..: : :::::::::: ::.:.::.::.. .::.:.: .::.: :.. gi|126 SEFKECAFEAYLGESLIISCDTKQQGMTKEWVTPNNEKVLNEVGNGTVKVLQNGSLQFEH 280 290 300 310 320 330 480 490 500 510 520 530 mKIAA1 VQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIY ..::: :.:::::.::.::::::::.::.::: :: :::::::::::::::::::::::: gi|126 IRVEDQGLYTCYAVGEAFNETLSVEVKVHNFTRHGPHDTLNTAYTTLVGCILSVVLVLIY 340 350 360 370 380 390 540 550 560 570 580 590 mKIAA1 LYLTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGD-KDDGFDRRVAFLEPAGP :::::::::::. :.:.:::::::::::::::::::::::: ::.:::::::::::.:: gi|126 LYLTPCRCWCRAGERPTSHQGDSLSSSMLSTTPNHDPMAGGGGKDSGFDRRVAFLEPTGP 400 410 420 430 440 450 600 610 620 630 mKIAA1 GQGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV ::::::::::::::::::.. ::::.:::::::::::::::::: gi|126 GQGQNGKLKPGNTLPVPEGA-KGQRKMSDPESVSSVFSDTPIVV 460 470 480 490 >>gi|123122753|emb|CAM27260.1| adhesion molecule with Ig (309 aa) initn: 1942 init1: 1942 opt: 1942 Z-score: 1994.6 bits: 378.2 E(): 2.2e-102 Smith-Waterman score: 1942; 100.000% identity (100.000% similar) in 289 aa overlap (147-435:1-289) 120 130 140 150 160 170 mKIAA1 VKVTLPYSTRTCRGDSLPDPVAFLALPSDTMQPQRDLRGLWLLLLSVFLLLFEVARAGRS :::::::::::::::::::::::::::::: gi|123 MQPQRDLRGLWLLLLSVFLLLFEVARAGRS 10 20 30 180 190 200 210 220 230 mKIAA1 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHS 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA1 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA1 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA1 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNC 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA1 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV ::::::::::::::::::: gi|123 SEYKESAWEAHLGDTLTIRTLPPTVYTRLANLRAHGLYN 280 290 300 638 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 00:24:51 2009 done: Fri Mar 13 00:32:32 2009 Total Scan time: 1020.920 Total Display time: 0.160 Function used was FASTA [version 34.26.5 April 26, 2007]