FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00285.ptfa, 838 aa
 vs ./tmplib.26680 library

1768179 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.5268+/-0.00388; mu= 16.7334+/- 0.259
 mean_var=74.7063+/-17.069, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1484

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4251  ( 630 res)   mfj01022                   ( 630)  127   37  0.0072


>>mKIAA4251  ( 630 res)   mfj01022                        (630 aa)
 initn: 140 init1:  53 opt: 127  Z-score: 143.8  bits: 37.2 E(): 0.0072
Smith-Waterman score: 127;  24.862% identity (27.778% ungapped) in 181 aa overlap (227-403:431-596)

        200       210       220       230       240       250      
mFLJ00 PVLNHTYSMTGTYRITLEVNNTVSSVTAHADIRVFQELHGLTVYLSPSVEQGAPM-VVSA
                                     :.... :    :.: : :: .:::  ..  
mKIAA4 FLSGECMCDVPEGGLVPKSLYRTAEELENEDLKLWTE----TIYQSASVFKGAPHEILIQ
              410       420       430           440       450      

         260       270       280       290       300        310    
mFLJ00 SVESGDNITWTFDMGDGTVFTGPEATVQHVYLRAQNFTVTVEAANPAGHLSQSL-HVQVF
        :.... ::: ::.  : .  .   . .      ..   .   ..:.:.  : . .:  .
mKIAA4 IVDASSVITWDFDVCKGDIVFNIYHSKRSPQPPKKDSLGAHSITSPGGNNVQLIDKVWQL
        460       470       480       490       500       510      

          320        330       340       350       360        370  
mFLJ00 VLEVLRIE-PSTCIPTQPSAQLMAHVTGDPVHYLFDWTFGDGSSNVTVHGHPS-VTHNFT
         .   .: :  :   . :.:  .:::  :  :...: :         :  :. .. :. 
mKIAA4 GRDYSMVESPLICKEGE-SVQ-GSHVTRWPGFYILQWKF---------HTMPACAATNLP
        520       530         540       550                560     

            380       390       400       410       420       430  
mFLJ00 RSGIFPLALVLSSHVNKAHYFTSICVEPEIRNITLQPERQFVKLGDEARLVAYSWPPFPY
       :      .: .:::  :. :.: .    ..:.                            
mKIAA4 RVDDVLASLQVSSHKCKVMYYTEVIGSEDFRGSMTSLESSHSGFSQLSAATTSSSQSQSS
         570       580       590       600       610       620     

            440       450       460       470       480       490  
mFLJ00 RYTWDFGTEDTTHTQTGGSEVKFIYREPGSYLVIVTVSNNISSTNDSAFVEVQEPVLVTG
                                                                   
mKIAA4 SMISR                                                       
         630                                                       




838 residues in 1 query   sequences
1768179 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:09:01 2006 done: Mon Mar 27 10:09:02 2006
 Scan time:  0.920 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]