FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4093.ptfa, 871 aa vs ./tmplib.26680 library 1768146 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 10.8520+/-0.00924; mu= -9.9416+/- 0.609 mean_var=439.1143+/-107.300, 0's: 0 Z-trim: 4 B-trim: 137 in 1/35 Lambda= 0.0612 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0820 ( 452 res) mbg06229 ( 452) 1385 137 5.9e-33 mKIAA0567 ( 979 res) mbg05630 ( 979) 394 50 2.2e-06 >>mKIAA0820 ( 452 res) mbg06229 (452 aa) initn: 1819 init1: 651 opt: 1385 Z-score: 684.0 bits: 136.7 E(): 5.9e-33 Smith-Waterman score: 2000; 69.414% identity (76.372% ungapped) in 461 aa overlap (414-864:1-429) 390 400 410 420 430 440 mKIAA4 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDLAFEATVKKQVQKLKEP :::::::::::::.:::: ::::. ::: : mKIAA0 NIHGIRTGLFTPDMAFEAIVKKQIVKLKGP 10 20 30 450 460 470 480 490 500 mKIAA4 SIKCVDMVVSELTSTIRKCSEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIEL :.: ::.:..:: .:..::...: ..::: :: ::::..:::::::.::.::.:::::.. mKIAA0 SLKSVDLVMQELINTVKKCTKRLANFPRLCEETERIVANHIREREGKTKDQVLLLIDIQV 40 50 60 70 80 90 510 520 530 540 550 560 mKIAA4 AYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWF .:.:::::::::::::::::.:..::.: ::: ::::::::..:::::: mKIAA0 SYINTNHEDFIGFANAQQRSSQVHKKSTIGNQ----VIRKGWLTVSNIGIMK-------- 100 110 120 130 570 580 590 600 610 620 mKIAA4 VLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQL :::::::::::: .::::.::::::::::::.:::::::::::::::: : mKIAA0 ----------KDDEEKEKKYMLPLDNLKVRDVEKGFMSSKHVFALFNTEQRNVYKDYRFL 140 150 160 170 180 630 640 650 660 670 680 mKIAA4 ELACETQEEVDSWKASFLRAGVYPER-VGDKEKASETEENG-SDSFMHSMDPQLERQVET ::::..::.:::::::.:::::::.. ::... .:..::: ...: :::::::::::: mKIAA0 ELACDSQEDVDSWKASLLRAGVYPDKSVGSNK--TENDENGQAENF--SMDPQLERQVET 190 200 210 220 230 240 690 700 710 720 730 740 mKIAA4 IRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEESAEQ :::::::::.:.:: .:::.:::::::::::.:.:: :::::.::: :::::::::::: mKIAA0 IRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTLMEESAEQ 250 260 270 280 290 300 750 760 770 780 790 800 mKIAA4 AQRRDEMLRMYHALKEALSIIGDINTTTVSTPMPPPVDDSWLQVQSVPAGRRSPTSSPTP :::::::::::.::::::.:::::::.::::: :::::::::: .:::: ::: mKIAA0 AQRRDEMLRMYQALKEALAIIGDINTATVSTPAPPPVDDSWLQ-----HSRRSPPPSPTT 310 320 330 340 350 810 820 830 840 850 mKIAA4 QRRAP-AVPPARPGS-RGPAPGPPPAGSALGGAPPVPSRPGASP------DPFGPPPQVP ::: ..: :: : :::::. : : .:::::: ::: : : :: ::::: mKIAA0 QRRLTISAPLPRPTSGRGPAPAIPSPGPH-SGAPPVPFRPGPLPPFPNSSDSFGAPPQVP 360 370 380 390 400 410 860 870 mKIAA4 SRPNRAPPGVPRITISDP :::.::::.:: mKIAA0 SRPTRAPPSVPSRRPPPSPTRPTIIRPLESSLLD 420 430 440 450 >>mKIAA0567 ( 979 res) mbg05630 (979 aa) initn: 237 init1: 208 opt: 394 Z-score: 207.1 bits: 49.6 E(): 2.2e-06 Smith-Waterman score: 403; 22.595% identity (24.642% ungapped) in 686 aa overlap (27-671:306-975) 10 20 30 40 50 mKIAA4 GPRARAGAAAGSQPAGPAATMGNRGMEDLIPLVNRLQDAFSAI--GQNADLDLPQI ..:: . ... :..: . :.. ::.. mKIAA0 ILERLEKENKELRKLVLQKDDKGIHHRKLKKSLIDMYSEVLDVLSDYDASYNTQDHLPRV 280 290 300 310 320 330 60 70 80 90 100 mKIAA4 AVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGK---- .::: :::::.:::: .. ..::::: ..:: :. . : .. . : : . . mKIAA0 VVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLT 340 350 360 370 380 390 110 120 130 140 150 160 mKIAA4 KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQP : :. .: ::: . . . . .:: :.: : .: . ..::::::. .. .. . mKIAA0 KEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMA 400 410 420 430 440 450 170 180 190 200 210 220 mKIAA4 PDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL :: . : .. .. . : .:: .. .. : : . .....::.:.::: :.::.:: mKIAA0 PDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDL 460 470 480 490 500 510 230 240 250 260 270 280 mKIAA4 MDEG----TDARDVLENKLLPLRR-GYIGVVNRSQKDIDGKKDITAALAAERKFF--LSH ... . ....:.::.:.. ::..::. . .....: : :..:: .. mKIAA0 AEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG---NSSESIEAIREYEEEFFSEFKT 520 530 540 550 560 570 290 300 310 320 330 340 mKIAA4 PSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKE--VDEYKNFRPD . .: .... . .: : .. ... : ::. ...:. :. .:: .. mKIAA0 AKDKHAKEQQADSFKATRFN--LETEWKNNYPRLRELDRNELFEKAKNEILDEVISLSQV 580 590 600 610 620 630 350 360 370 380 390 mKIAA4 DPARKTKALLQ-MVQQFAVDFEKRIEGSGDQI---DTYELSGGARINRIFHERFPFELVK : . . : : . .. .. . : . : :.. . .... ...: . :. mKIAA0 TPKHWEEILQQSLWERVSTHVIENIYLPAAQTMNSGTFNTTVDIKLKQWTDKQLPNKAVE 640 650 660 670 680 690 400 410 420 430 440 450 mKIAA4 MEFD--EKELRREISYAIKNIHGIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSE . .. ..:. : .. . : . . :. ... . . : :.. .. . : mKIAA0 VAWETLQEEFSRFMTEPKGKEHDDIFDKLKEAVKEESIKRHKWNDFAEDSLRVIQHNALE 700 710 720 730 740 750 460 470 480 490 500 510 mKIAA4 LTSTIRKCSEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYM---NTNHE :. :.: ::. ::. . .... :. .. :. : . .: : ..: mKIAA0 D----RSISDK-QQWDAAIYFMEEALQGRLKDTENAIEN--MIGPDWKKRWMYWKNRTQE 760 770 780 790 800 520 530 540 550 560 mKIAA4 DFIG--FANAQQRSNQMNKKKTSG-NQDEILVIRKGWLTINNIGIMKGGSKEYW------ . . : .. ..: .. . .::: ..::. : .. . . :. : mKIAA0 QCVHNETKNELEKMLKVNDEHPAYLASDEITTVRKN-LESRGVEVDPSLIKDTWHQVYRR 810 820 830 840 850 860 570 580 590 600 610 mKIAA4 -FVLTAEN-LSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALF-NT-EQRNVYK :. :: : . . ...... . :. :: : ....:. :: .:. . mKIAA0 HFLKTALNHCNLCRRGFYYYQRHFIDSE-LECNDVVL-FWRIQRMLAITANTLRQQLTNT 870 880 890 900 910 920 620 630 640 650 660 670 mKIAA4 DYRQLELAC-ETQEEV--DSWKASFLRAGVYPERVGDKEKASETEENGSDSFMHSMDPQL . :.:: :. :. :. : : .: . . : .:. : .:. :.:.... mKIAA0 EVRRLEKNVKEVLEDFAEDGEKKVKLLTGKRVQLAEDLKKVREIQEK-LDAFIEALHQEK 930 940 950 960 970 680 690 700 710 720 730 mKIAA4 ERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLM 871 residues in 1 query sequences 1768146 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:01:39 2006 done: Mon Mar 27 11:01:40 2006 Scan time: 0.880 Display time: 0.090 Function used was FASTA [version 3.4t11 Apr 17, 2002]