FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1671.ptfa, 191 aa
 vs ./tmplib.26680 library

1768826 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.2429+/-0.00632; mu= 2.9313+/- 0.421
 mean_var=203.7414+/-49.211, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.0899

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1741  ( 1324 res)   mpg01173                  (1324)  308   52 1.6e-07


>>mKIAA1741  ( 1324 res)   mpg01173                       (1324 aa)
 initn: 313 init1: 108 opt: 308  Z-score: 227.3  bits: 51.6 E(): 1.6e-07
Smith-Waterman score: 308;  34.184% identity (39.412% ungapped) in 196 aa overlap (4-184:1139-1323)

                                          10         20        30  
mKIAA1                            EGPPPSDVCPA-QEDDFSFIHQTSVLDSSALKT
                                     ::  . :.   .:::::..: .:::.  ..
mKIAA1 ASQVEEVDGTWSLTGAARQNEQASAPPPRRPPRGLLPSCPSEDFSFIEDTEILDSAMYRS
     1110      1120      1130      1140      1150      1160        

             40           50        60        70        80         
mKIAA1 RVQLSKRSRRRAPI---SHSLRRSQFSESESRSPLEEESHSTWMFKDSTEEKSPRRDESD
       :..:...  .:::    . .:  :. ..:..:           .:.:::: .. :   ::
mKIAA1 RANLGRKRGHRAPAIRPGGTLGLSETADSDTR-----------LFQDSTEPRASRVPSSD
     1170      1180      1190      1200                 1210       

      90          100          110       120       130        140  
mKIAA1 E---EPPRVERTPVS---HPQRMPVFPGMDPAVLKAQLPKRSEVDSPGD-SLSWTPQPKS
       :   : :. .:: .:   .  .. .:::..:..:::.: .:..    :. . : . : .:
mKIAA1 EEVVEEPQSRRTRMSLGTKGLKVNLFPGLSPSALKAKLRSRNRSAEEGEVTESKSSQKES
      1220      1230      1240      1250      1260      1270       

                150       160       170       180       190 
mKIAA1 ----PKSPFHPGVLGSRVLPPSTEKEERSEECSPQWLKELKSKKRQSLYENQA
            ::   ::.    .:::. ::   ::  ::.::. :: ::..       
mKIAA1 SVQRSKSCKVPGLGKPLTLPPKPEKSSGSEGSSPNWLQALKLKKKKI      
      1280      1290      1300      1310      1320          




191 residues in 1 query   sequences
1768826 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:50:37 2006 done: Mon Mar 27 10:50:37 2006
 Scan time:  0.420 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]