FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4004.ptfa, 422 aa vs ./tmplib.26680 library 1768595 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.9966+/-0.00358; mu= 17.7635+/- 0.240 mean_var=64.8217+/-14.712, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.1593 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1060 ( 1115 res) mbh01281 (1115) 1067 254 2.7e-68 mKIAA0511 ( 1150 res) mbg03508 (1150) 617 151 3.8e-37 mKIAA0520 ( 1334 res) mbg16592 (1334) 325 84 6.6e-17 mKIAA4084 ( 626 res) mfj00113 ( 626) 162 46 7.7e-06 mKIAA0422 ( 391 res) mbh03531 ( 391) 127 38 0.0015 >>mKIAA1060 ( 1115 res) mbh01281 (1115 aa) initn: 1351 init1: 1067 opt: 1067 Z-score: 1318.4 bits: 254.4 E(): 2.7e-68 Smith-Waterman score: 1281; 54.960% identity (59.942% ungapped) in 373 aa overlap (14-386:53-394) 10 20 30 40 mKIAA4 KTMARLFSPRPPPSEDLFYETYYSLSQQYPLLILLLVIVLCAL :.: .::.:: .:::.::...::.::. : mKIAA1 QEAMRRRRYLRDRAEAAAAAAAGGGEGLQRSRDWLYESYYCMSQQHPLIVFLLLIVMGAC 30 40 50 60 70 80 50 60 70 80 90 100 mKIAA4 VALPAVAWASGRELTSDPSFLTTVLCALGGFSLLLGLASREQQLQRWTRPLSGLIWVALL .:: :: .: : :. . .:: :: ::. : .. :. :. ... : .: .::. :. mKIAA1 LALLAVFFALGLEVEDHVAFLITVPTALAIFFAIFILVCIESVFKKLLRVFSLVIWICLV 90 100 110 120 130 140 110 120 130 140 150 160 mKIAA4 ALGYGFLFTGGVVSAWDQVRKIKAWGKVNLKFRPWAQHHGHSASHTLLQVSFFLFIIFTV :.:: :. ::.::::::: ::::::::.: mKIAA1 AMGYLFMCFGGTVSAWDQV-------------------------------SFFLFIIFVV 150 160 170 170 180 190 200 210 220 mKIAA4 YAMLPLGMRDAAAAGVISSLSHLLVLGLYLGWQPESQRALLPQLAANAVLFLCGNVVGAY :.:::..:::: :.:..: :: .::..::. : ... :. :. ::...:.:::..::: mKIAA1 YTMLPFNMRDAIIASVLTSSSHTIVLSVYLSATPGAKEHLFWQILANVIIFICGNLAGAY 180 190 200 210 220 230 230 240 250 260 270 280 mKIAA4 HKALMERALRATFREALSSLHSRRRLDTEKKHQEHLLLSILPAYLAREMKAEIMARLQAG :: ::: ::. :.:.. . ..:: .:. ::..::.::::.:::..: ::::::. :::. mKIAA1 HKHLMELALQQTYRDTCNCIKSRIKLEFEKRQQERLLLSLLPAHIAMEMKAEIIQRLQGP 240 250 260 270 280 290 290 300 310 320 330 340 mKIAA4 QRSRPENTNNFHSLYVKRHQGVSVLYADIVGFTRLASECSPKELVLMLNELFGKFDQIAK . .. :::::::.:::::: .::.:::::::::::::.::: ::: :::::::::::::: mKIAA1 KAGQMENTNNFHNLYVKRHTNVSILYADIVGFTRLASDCSPGELVHMLNELFGKFDQIAK 300 310 320 330 340 350 350 360 370 380 390 400 mKIAA4 EHECMRIKILGDCYYCVSGLPLSLPDHAINCVRMGLDMCRAIRSALVCEQEKLRAPGVGE :.:::::::::::::::::::.:::.:: :::.::::::.::.. mKIAA1 ENECMRIKILGDCYYCVSGLPISLPNHAKNCVKMGLDMCEAIKKVRDATGVDINMRVGVH 360 370 380 390 400 410 410 420 mKIAA4 GVREAGWQSSWRRGESWQH mKIAA1 SGNVLCGVIGLQKWQYDVWSHDVTLANHMEAGGVPGRVHISSVTLEHLNGAYKVEEGDGE 420 430 440 450 460 470 >>mKIAA0511 ( 1150 res) mbg03508 (1150 aa) initn: 638 init1: 377 opt: 617 Z-score: 759.3 bits: 151.0 E(): 3.8e-37 Smith-Waterman score: 638; 32.629% identity (38.611% ungapped) in 426 aa overlap (12-420:65-441) 10 20 30 40 mKIAA4 KTMARLFSPRPPPSEDLFYETYYSLSQQYPLLILLLVIVL- : : . .:.::.. ... ::.:.. .: mKIAA0 DRGVGRTHEISVRNSGSCLCLPRFMRLTFVPESLENLYQTYFKRQRHETLLVLVVFAALF 40 50 60 70 80 90 50 60 70 80 90 mKIAA4 -CALVALPAVAWASGRELTSDPSFLTTVLCALGGFSLLLG-----LASREQQLQRWTRPL : .:.. ::...: . :. .. : ::.:.: : .. .: .: . mKIAA0 DCYVVVMCAVVFSSDK--------LAPLMVA--GFGLVLDIILFVLCKKGLLPDRVSRKV 100 110 120 130 140 100 110 120 130 140 150 mKIAA4 SG-LIWVALLALGYGFLFTGGVVSAWDQVRKIKAWGKVNLKFRPWAQHHGHSASHTLLQV :.:. . : ...: .:.: ..:.:: :. mKIAA0 VPYLLWLLISAQIFSYL---------------------GLNFS-----RAHAASDTVGWQ 150 160 170 160 170 180 190 200 210 mKIAA4 SFFLFIIFTVYAMLPLGMRDAAAAGVISSLSHLLVLGLYLGWQPESQ---RALLPQLAAN .:: .:. . :::.. . .:.: . : ::::. .. : ... :: .. :: mKIAA0 AFF---VFSFFITLPLSLSPIVIISVVSCVVHTLVLGVTVAQQQQDELEGMQLLREILAN 180 190 200 210 220 230 220 230 240 250 260 270 mKIAA4 AVLFLCGNVVGAYHKALMERALRATFREALSSLHSRRRLDTEKKHQEHLLLSILPAYLAR . :.::. .:: . . .: : .: :: .::. . :. ....::.:.::::: ..: mKIAA0 VFLYLCAIIVGIMSYYMADRKHRKAFLEARQSLEVKMNLEEQSQQQENLMLSILPKHVAD 240 250 260 270 280 290 280 290 300 310 320 330 mKIAA4 EMKAEIMARLQAGQRSRPENTNNFHSLYVKRHQGVSVLYADIVGFTRLASECSPKELVLM :: .. . . .:... . :...:. ::..::.:.:::::::.:.: :: .::: . mKIAA0 EMLKDM--KKDESQKDQQQ----FNTMYMYRHENVSILFADIVGFTQLSSACSAQELVKL 300 310 320 330 340 340 350 360 370 380 390 mKIAA4 LNELFGKFDQIAKEHECMRIKILGDCYYCVSGLPLSLPDHAINCVRMGLDMCRAIRSALV :::::..::..: ... .:::::::::::. ::: :::. . ::: : .:: . : mKIAA0 LNELFARFDKLAAKYHQLRIKILGDCYYCICGLPDYREDHAVCSILMGLAMVEAI--SYV 350 360 370 380 390 400 400 410 420 mKIAA4 CEQEK----LRAPGVGEGVREAGW--QSSWRRGESWQH :. : .:. :: :. .: :. :. . :. mKIAA0 REKTKTGVDMRV-GVHTGTVLGGVLGQKRWQY-DVWSTDVTVANKMEAGGIPGRVHISQS 410 420 430 440 450 460 mKIAA0 TMDCLKGEFDVEPGDGGSRCDYLDEKGIETYLIIASKPEVKKTAQNGLNGSAVPNGAPAS 470 480 490 500 510 520 >>mKIAA0520 ( 1334 res) mbg16592 (1334 aa) initn: 341 init1: 311 opt: 325 Z-score: 395.9 bits: 83.9 E(): 6.6e-17 Smith-Waterman score: 407; 28.912% identity (32.819% ungapped) in 294 aa overlap (134-395:172-462) 110 120 130 140 150 mKIAA4 ALGYGFLFTGGVVSAWDQVRKIKAWGKVNLKFRPWAQHHGH--SASHTLL---------Q .:. :. :. :..::: : mKIAA0 LFTFTKLYARHYAWTSLALTLLVFALTLAAQFQVWTPLSGRVDSSNHTLTATPADTCLSQ 150 160 170 180 190 200 160 170 180 190 200 mKIAA4 VSFF---LFIIFTVYAMLPLGMRDAAAAGVISSLSHLLVLGLYLG----WQPESQRALLP :. : . ... .:... : . . ::. :. . ..: .. . . :: mKIAA0 VGSFSICIEVLLLLYTVMQLPLYLSLFLGVVYSVL-FETFGYHFRNEDCYPSPGPGALHW 210 220 230 240 250 260 210 220 230 240 250 260 mKIAA4 QLAANAVLFLCGNVVGAYHKALMERALRATFREALSSLHSRRRLDTEKKHQEHLLLSILP .: . :.: .: ...: . .. . :.:: .. .:. . :..:: .:... :..: mKIAA0 ELLSRALLHVCIHAIGIHLFVMSQVRSRSTFLKVGQSIMHGKDLEVEKALKERMIHSVMP 270 280 290 300 310 320 270 280 290 300 310 mKIAA4 AYLARE-MKA---EIMARLQAGQRSRPENTNN----------FHSLYVKRHQGVSVLYAD .: . :: : .. : :.: .. :. . ... . ::.:.:: mKIAA0 RIIADDLMKQGDEESENSVKRHATSSPKNRKKKSSIQKAPIAFRPFKMQQIEEVSILFAD 330 340 350 360 370 380 320 330 340 350 360 370 mKIAA4 IVGFTRLASECSPKELVLMLNELFGKFDQIAKEHECMRIKILGDCYYCVSGLPLSLPDHA :::::..... : . :: .::.:::.::.. .. .: .:. ::::::::.: : ::: mKIAA0 IVGFTKMSANKSAHALVGLLNDLFGRFDRLCEQTKCEKISTLGDCYYCVAGCPEPRADHA 390 400 410 420 430 440 380 390 400 410 420 mKIAA4 INCVRMGLDMCRAIRSALVCEQEKLRAPGVGEGVREAGWQSSWRRGESWQH :..::: : .::.. :...: mKIAA0 YCCIEMGLGMIKAIEQ--FCQEKKEMVNMRVGVHTGTVLCGILGMRRFKFDVWSNDVNLA 450 460 470 480 490 >>mKIAA4084 ( 626 res) mfj00113 (626 aa) initn: 219 init1: 83 opt: 162 Z-score: 197.2 bits: 46.1 E(): 7.7e-06 Smith-Waterman score: 198; 28.440% identity (38.037% ungapped) in 218 aa overlap (198-381:313-509) 170 180 190 200 210 220 mKIAA4 PLGMRDAAAAGVISSLSHLLVLGLYLGWQPESQRALLPQLAANAVLFLCGNVV------- ..: ::. :...::::. : mKIAA4 VLRSKEGLLDVEKLECEDELTGAEISCLRLKGQMIYLPE--ADSILFLCSPSVMNLDDLT 290 300 310 320 330 340 230 240 250 260 mKIAA4 --GAY------HKA-----LMERALRATFR--EALSSLHSR-----RRLDTEKKHQEHLL : : : : :. . .: .. . : : .: : :. :::. . :: mKIAA4 RRGLYLSDIPLHDATRDLVLLGEQFREEYKLTQELEILTDRLQLTLRALEDEKKKTDTLL 350 360 370 380 390 400 270 280 290 300 310 320 mKIAA4 LSILPAYLAREMKAEIMARLQAGQRSRPENTNNFHSLYVKRHQGVSVLYADIVGFTRLAS :.:: .: :.. ..:: . .::...:..:.. ::::. . : mKIAA4 YSVLPPSVANELR-----------HKRP--------VPAKRYDNVTILFSGIVGFNAFCS 410 420 430 440 330 340 350 360 370 mKIAA4 ECSPKE----LVLMLNELFGKFDQIA---KEHECMRIKILGDCYYCVSGLPLSLPDHAIN . . : .: .::.:. .:: .. :. .... .:: :. ::::: :: . mKIAA4 KHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHARS 450 460 470 480 490 500 380 390 400 410 420 mKIAA4 CVRMGLDMCRAIRSALVCEQEKLRAPGVGEGVREAGWQSSWRRGESWQH ...::: mKIAA4 ICHLALDMMEIAGQVQVDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTET 510 520 530 540 550 560 >>mKIAA0422 ( 391 res) mbh03531 (391 aa) initn: 47 init1: 47 opt: 127 Z-score: 156.0 bits: 37.8 E(): 0.0015 Smith-Waterman score: 151; 25.620% identity (30.392% ungapped) in 242 aa overlap (144-370:55-273) 120 130 140 150 160 170 mKIAA4 GVVSAWDQVRKIKAWGKVNLKFRPWAQHHGHSASHTLLQVSFFLFIIFTVYAMLPLGMRD : .: : ..:.: :: ..: :: mKIAA0 VTQRCLCCPPSPQYFVGNVLLSLLASSVFLHISSIGKLAMTFILG--FTYLVLLLLG--- 30 40 50 60 70 180 190 200 210 220 mKIAA4 AAAAGVISSLSHLL-VLGL------YLGWQ-PESQRALLPQLAANAVLFLCGNVVGAYHK :..... . :: : :: . : . : :. : .. :..: .. : mKIAA0 -PPAAIFDNYDLLLGVHGLASSNETFDGLDCPAVGRVALKYMTP--VILLVFALALYLHA 80 90 100 110 120 130 230 240 250 260 270 280 mKIAA4 ALMERALRATFREALSSLHSRRRLDTEKKHQEHLLLSILPAYLAREMKAEIMARLQAGQR .: . : : :.. ..... . ....:: .::: ... :...:: .: mKIAA0 QQVESTARLDFLWKLQATGEKEEMEELQAYNRRLLHNILP----KDVAAHFLAR----ER 140 150 160 170 180 290 300 310 320 330 340 mKIAA4 SRPENTNNFHSLYVKRHQGVSVLYADIVGFTRLASECSPK----ELVLMLNELFGKFDQI : :: . . :.:..:.:..:... : . : . .:::... ::.: mKIAA0 RNDE-------LYYQSCECVAVMFASIANFSEFYVELEANNEGVECLRLLNEIIADFDEI 190 200 210 220 230 240 350 360 370 380 390 mKIAA4 AKEH---ECMRIKILGDCYYCVSGLPLSLPDHAINCVRMGLDMCRAIRSALVCEQEKLRA .:. . .:: .:. :. .::: : :.. mKIAA0 ISEERFRQLEKIKTIGSTYMAASGLNASTYDQVGRSHITALADYAMRLMEQMKHINEHSF 250 260 270 280 290 300 400 410 420 mKIAA4 PGVGEGVREAGWQSSWRRGESWQH mKIAA0 NNFQMKIGLNMGPVVAGVIGARKPQYDIWGNTVNVSSRMDSTGVPDRIQVTTDLYQVLAA 310 320 330 340 350 360 422 residues in 1 query sequences 1768595 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:59:02 2006 done: Mon Mar 27 10:59:03 2006 Scan time: 0.620 Display time: 0.090 Function used was FASTA [version 3.4t11 Apr 17, 2002]