FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4199.ptfa, 510 aa vs ./tmplib.26680 library 1768507 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.8530+/-0.00523; mu= 10.5322+/- 0.348 mean_var=137.8317+/-33.351, 0's: 0 Z-trim: 7 B-trim: 56 in 1/35 Lambda= 0.1092 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0708 ( 2228 res) mbg06040 (2228) 564 101 9.3e-22 mKIAA0161 ( 350 res) mfj06138 ( 350) 396 74 2.7e-14 mKIAA1386 ( 1087 res) mbg07509 (1087) 295 58 3.4e-09 mFLJ00217 ( 590 res) mbh01524 ( 590) 229 48 3.1e-06 >>mKIAA0708 ( 2228 res) mbg06040 (2228 aa) initn: 563 init1: 233 opt: 564 Z-score: 483.0 bits: 101.1 E(): 9.3e-22 Smith-Waterman score: 614; 26.471% identity (28.496% ungapped) in 408 aa overlap (81-479:1699-2086) 60 70 80 90 100 110 mKIAA4 DIEDYYVGVASDVEQQGADAFDPEEYQFTCLTYKESEGALHEHMTSLASVLKVSHSVAKL .. .: :: ... . .. .:.. .::. mKIAA0 FCGNKNTETSRPSPEAVVALASLQLPAGRTMSPQEVEGLMEQTVRQVQETLNLEPDVAQH 1670 1680 1690 1700 1710 1720 120 130 140 150 160 mKIAA4 ILVNFHWQVSEILDRYRSNSAQLLVEARVQPNPSKHVPTAHPPHHCAVCMQFVR-KENLL .:.. :: . ..:. : .. ::. : .. .. ::: : .: ::. . ... mKIAA0 LLAHSHWGTEQLLQSYSDDPEPLLLAAGLRVPQAQVVPTR--PDQCPVCVTPLGPHDDSP 1730 1740 1750 1760 1770 1780 170 180 190 200 210 220 mKIAA4 SLACQHQFCRSCWEQHCSVLVKDGVGVGISCMAQDCPLRTPEDFVFPLLPNEELRDKYRR :: : : :.:::... .. .... .. .: ::: . :. .. . :. .::.. mKIAA0 SLCCLHCCCKSCWNEYLTTRIEQNFVLNCTCPIADCPAQPTGAFIRNIVSSPEVISKYEK 1790 1800 1810 1820 1830 1840 230 240 250 260 270 280 mKIAA4 YLFRDYVESHFQLQLCPGAD-CPMVIRVQEPRARRVQCNRCSEVFCFKCR-QMYHAPTDC :.: :::: .: : . . : .. .. . . :..:. . ::.: : :..: mKIAA0 ALLRGYVESCSNLTWCTNPQGCDRIL-CRQGLGSGTTCSKCGWASCFSCSFPEAHYPASC 1850 1860 1870 1880 1890 1900 290 300 310 320 330 340 mKIAA4 ATIRKWLTKCAD-DSETANYISAH-----TKDCPKCNICIEKNGGCNHMQCSKCKHDFCW . . .:. . :. ... : : .: ::.:. :::: :: :: :..:.: ::: mKIAA0 GHMSQWVDDGGYYDGMSVEAQSKHLAKLISKRCPSCQAPIEKNEGCLHMTCARCNHGFCW 1910 1920 1930 1940 1950 1960 350 360 370 380 390 400 mKIAA4 MCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQ :: .:: ..::.:: .:... ::. :.. : :: :... .. mKIAA0 RCLKSWKPSHKDYYNCSA------MVSKA----ARQE-KRFQDYNERCTFHHQAREFA-- 1970 1980 1990 2000 2010 410 420 430 440 450 460 mKIAA4 TYERIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFE .. . : ..... .. .::.: . : . : .: :. :..: .. . : mKIAA0 ----VNLRNQASAIQEVPPPKSFTFLQDACRALEQARKVLAYACVYSFYSQDTEYMDVVE 2020 2030 2040 2050 2060 470 480 490 500 510 mKIAA4 YQQAQLEAEIENLSWKVERADSYDRGDLENQMHIAEQRRRTLLKDFHDT : .:: . . :. .:. mKIAA0 QQTENLELHTNALQILLEETLLRCRDLASSLRFLRADCLSTGTELLRRIQERLLAILQHS 2070 2080 2090 2100 2110 2120 >>mKIAA0161 ( 350 res) mfj06138 (350 aa) initn: 340 init1: 183 opt: 396 Z-score: 349.1 bits: 73.6 E(): 2.7e-14 Smith-Waterman score: 396; 27.426% identity (29.148% ungapped) in 237 aa overlap (117-344:42-273) 90 100 110 120 130 140 mKIAA4 EGALHEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYRSNSAQLLVEARVQPNPSKH :.. .: .. . .. :: .:. . mKIAA0 DGPLVQRPLPSTYGEKHLNTPKHSRTPRPGWKIPPLLTSALPTDCSAMTTARYRPTWDLA 20 30 40 50 60 70 150 160 170 180 190 200 mKIAA4 VPTAHPPHHCAVCMQFVRKENLLSLA-CQHQFCRSCWEQHCSVLVKDGVGVGISCMAQDC . : : .:. :.. ..: :: :: : .:. .:.:.:. ..::: : mKIAA0 LD---PLVSCKLCLGEYPAEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC 80 90 100 110 120 210 220 230 240 250 260 mKIAA4 PLR--TPEDFVFPLLPNEELRDKYRRYLFRDYVESHFQLQLCPGADCPMVIRVQE---PR : . :. . .. : .. .:.. :. : ::.. : : ..:. mKIAA0 PKQGHLQENEIECMVAAEIMQ-RYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDIGLQT 130 140 150 160 170 180 270 280 290 300 310 mKIAA4 ARRVQCNRCSEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYI---SAHTKDCPKC . :::. :. :: :. .: : .: .. .: . .: : :::: mKIAA0 PQLVQCKACDMEFCSACKARWHPGQGCPETMP-ITFLPGETSSAFKMEEGDAPIKRCPKC 190 200 210 220 230 240 320 330 340 350 360 370 mKIAA4 NICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQARE . ::.. :: .:.:..::: :::.:: mKIAA0 RVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHYDKGPCRNKLGHSRASVIWHRT 250 260 270 280 290 300 >>mKIAA1386 ( 1087 res) mbg07509 (1087 aa) initn: 447 init1: 208 opt: 295 Z-score: 257.4 bits: 58.3 E(): 3.4e-09 Smith-Waterman score: 724; 26.715% identity (32.104% ungapped) in 554 aa overlap (42-504:177-728) 20 30 40 50 60 mKIAA4 ATLLDVKMSVDMNSQGSDSNEEDYDPNCEEEEEEEEDPGDIED--YYVGVASDVEQQGAD :.:... : : . . .: ..:.: . mKIAA1 KKNTPLHYAAASGMKACVELLVKHGGDLFAENENRDTPCDCAEKQQHKDLALSLESQMVF 150 160 170 180 190 200 70 80 90 100 110 mKIAA4 AFDPE----EYQFTCLTYKES-EGALHEHMTSL--------ASVLKVSHSVAKLILVNFH . ::: : ... : .: :: . . : :..:.. .:. .: mKIAA1 SRDPEAEEIEAEYAALDKREPYEGLRPQDLRRLKDMLIVETADMLQAPLFTAEALLRAHD 210 220 230 240 250 260 120 130 140 150 mKIAA4 WQVSEILDRYRSNSAQLLVEARVQ---PNPSKH-----VPTAHPPHH------------- :. ..:. . :: . .. :: : :: . .:. . :. mKIAA1 WDREKLLEAWMSNPENCCQRSGVQMPTPPPSGYNAWDTLPSPRTPRTTRSSVTSPDEISL 270 280 290 300 310 320 160 170 180 190 200 mKIAA4 ---------CAVCMQFVRK-ENLLSLACQHQFCRSCWEQHCSVLVKDGVGVGISCMAQDC : .:: . :. ... : :.:::.::: .. ...: . .: : : .: mKIAA1 SPGDLDTSLCDICMCSISVFEDPVDMPCGHDFCRGCWEAFLNLKIQEGEAHNIFCPAYEC 330 340 350 360 370 380 210 220 230 240 250 mKIAA4 PLRTPEDFVFPLLPNEELRDKYRRYLFRDYVESHFQLQLCPGADCPMVIRVQE------- .: : . .. ..:. .: .. .. .::.. .. :: : : ..:. . mKIAA1 FQLVPVDVIESVV-SKEMDKRYLQFDIKAFVENNPAIKWCPTAGCERAVRLTKQGSNPSG 390 400 410 420 430 440 260 270 280 290 mKIAA4 ------P--RARRVQCNRCSEVFCFKCRQMYHAPTDCATIRKWLTKCAD----------- : :: :.:.. ...::..: : : :: : ..:: : .. mKIAA1 SDTLSFPLLRAPAVDCGK-GHLFCWECLGEAHEPCDCQTWKNWLQKITEMKPEELVGVSE 450 460 470 480 490 500 300 310 320 330 340 350 mKIAA4 ---DSETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSE--- :. . .. ...: : .:. :.:: :::::::.:::.::::.:: .:: :.: mKIAA1 AYEDAANCLWLLTNSKPCANCKSPIQKNEGCNHMQCAKCKYDFCWICLEEWKKHSSSTGG 510 520 530 540 550 560 360 370 380 390 400 mKIAA4 YYECSRYKENPDIVNQSQQ----AQAR----EALKKYLFYFERWENHNKSLQLEAQTYER ::.:.::. . .::.. :. . . : ... :. :..::..: ::: . . mKIAA1 YYRCTRYEVIQHVEEQSKEMTVEAEKKHKRFQELDRFMHYYTRYKNHEHSYQLEQRLLKT 570 580 590 600 610 620 410 420 430 440 450 460 mKIAA4 IHEKIQE--RVMNNL-GTWIDWQYLQNAAKLLAKCRYTLQYTYPYAYYME-SGPRKKLFE .::... :.... : : ....:...: : : :. .:::....: .. .:..:: mKIAA1 AKEKMEQLSRALKETEGGCPDTTFIEDAVHVLLKTRRILKCSYPYGFFLEPKSTKKEIFE 630 640 650 660 670 680 470 480 490 500 510 mKIAA4 YQQAQLEAEIENLSWKVERAD-SYDRGDLENQMHIAEQRRRTLLKDFHDT .:..:: :.:. ::.: : . ...:.:. .: mKIAA1 LMQTDLEMVTEDLAQKVNRPYLRTPRHKIIRAACLVQQKRQEFLASVARGVAPADSPDAP 690 700 710 720 730 740 mKIAA1 RRSFAGGTWDWEYLGFASPEYRRRHRQQRRRGDVHSLLSNPTDLDEPSESTFDLPEGSSG 750 760 770 780 790 800 >>mFLJ00217 ( 590 res) mbh01524 (590 aa) initn: 185 init1: 102 opt: 229 Z-score: 204.3 bits: 47.6 E(): 3.1e-06 Smith-Waterman score: 278; 22.266% identity (25.792% ungapped) in 256 aa overlap (154-389:215-455) 130 140 150 160 170 180 mKIAA4 DRYRSNSAQLLVEARVQPNPSKHVPTAHPPHHCAVCMQFVRKENLLSL-ACQHQFCRSCW ..:::: . .. . .: .:. .: :. mFLJ00 QETPRNYELLDVVEAVRHSQDRAFLRRLLAQECAVCGWALPRNRVQALISCECTICPECF 190 200 210 220 230 240 190 200 210 220 230 mKIAA4 EQHCSVLVKDGVGVGISCMAQDCPLRTPEDFVFPLLP--NEELRDK--------YRRYLF .:: .. .:. . . : : : : . .. . . .::.. ... : mFLJ00 RQHFTIALKEKHITDMVCPACGRPDLTDDAQLLSYFSTLDIQLRESLDPDAYALFHKKLT 250 260 270 280 290 300 240 250 260 270 280 mKIAA4 RDYVESHFQLQLCPGADCPMVIRVQEPRARRVQCNRCSEVFCFKCRQMY---HAPTDCAT . . .. : :.: . . . : . .. : .: ..:: .:.... : .: mFLJ00 EAVLMRDPKFLWC--AQCSFGF-IYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCED 310 320 330 340 350 360 290 300 310 320 330 340 mKIAA4 IRKWLTKCADDSE-----TANYISAHTKDCPKCNICIE-KNGGCNHMQCSKCKHDFCWMC ...: : ..: : : :.. . :::::.. ::: :..:..:.:.:: : mFLJ00 FQNW--KRTNDPEYQAQGLAMYLQENGIDCPKCKFSYALARGGCMHFHCTQCRHQFCSGC 370 380 390 400 410 350 360 370 380 390 400 mKIAA4 LGDWKTHGSEYYECSRYKENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTY . . ... .: :: . ... . . :::.. : mFLJ00 YNAFYAKN----KC------PDPNCKVKKSLHGHHPRDCLFYLRDWTAARLQKLLQDNNV 420 430 440 450 460 410 420 430 440 450 460 mKIAA4 ERIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQ mFLJ00 MFNTEPPAGTRAVPGGGCRVMEQKEVHSGFRDEACGKETPPGYAGLCQAHYKEYLVSLIN 470 480 490 500 510 520 510 residues in 1 query sequences 1768507 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:04:47 2006 done: Mon Mar 27 11:04:48 2006 Scan time: 0.720 Display time: 0.110 Function used was FASTA [version 3.4t11 Apr 17, 2002]