FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1140.ptfa, 926 aa
 vs ./tmplib.26680 library

1768091 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.6103+/-0.00488; mu= 13.4744+/- 0.326
 mean_var=113.6190+/-25.562, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1203

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0103  ( 297 res)   mpk05323                   ( 297)  149   37  0.0047


>>mKIAA0103  ( 297 res)   mpk05323                        (297 aa)
 initn: 146 init1: 121 opt: 149  Z-score: 147.2  bits: 36.9 E(): 0.0047
Smith-Waterman score: 154;  21.818% identity (24.793% ungapped) in 275 aa overlap (656-913:39-297)

         630       640       650       660       670       680     
mKIAA1 EALTMCRDDANALHLLALLFSAQKYYQHALDVINMAITEHPENFNLMFTKVKLEQVLKGP
                                     ..::   ..  ... ... .: .  .  : 
mKIAA0 DVTWEEMRDKMRKWREENSRNSEQIMEVGEELINDYASKLGDDIWIIYEQVMIAALDYGR
       10        20        30        40        50        60        

         690        700       710       720       730          740 
mKIAA1 EEALVTCRQMLR-LWQTLYNFSQLGGLEKDGSFEGLTVKKQNGIHL---TLPDAHDADSG
       ..  . : : ::  .   .  ..: :..    ::..  . ...:.:    : .     ..
mKIAA0 DDLALFCLQELRRQFPGSHRVKRLTGMR----FEAME-RYDDAIQLYDRILQEDPTNTAA
       70        80        90           100        110       120   

               750       760       770       780       790         
mKIAA1 SRRASSI--AASRLEEAMSELTLTTSVLKQGPMQLWTTLEQIWLQAAELFMEQRQLKEAG
        .:  .:  : ..  ::. ::.     :.:     ..  .. : . :::......  .:.
mKIAA0 RKRKIAIRKAQGKTVEAIRELN---EYLEQ-----FVGDQEAWHELAELYINEHDYAKAA
           130       140          150            160       170     

     800       810       820          830          840       850   
mKIAA1 FCIQEAAGLFPTSHSVLYMRGRLAEVK---GSFEE---AKQLYKEALTVNPDGVRIMHSL
       ::..:     : .:  :: . . ::::   :..:.   ... . .:: .:  ..: . .:
mKIAA0 FCLEELMMTNPHNH--LYCQ-QYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGL
         180         190        200       210       220       230  

           860        870           880       890       900        
mKIAA1 GLMLSQLGHKSLAQ-KVLRDAVERQS----TFHEAWQGLGEVLQDQGQNEAAVDCFLTAL
        .  :... .  :. :. .: ..  :     ...:.:  :.  ..   .  ::. .: .:
mKIAA0 YMSASHIASNPKASAKMKKDNIKYASWAANQINRAYQFAGRSKKETKYSLKAVEDMLETL
            240       250       260       270       280       290  

      910       920      
mKIAA1 ELEASSPVLPFSIIAREL
       ..  :             
mKIAA0 QITQS             
                         




926 residues in 1 query   sequences
1768091 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:37:05 2006 done: Mon Mar 27 10:37:06 2006
 Scan time:  0.980 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]