FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4228.ptfa, 1123 aa
 vs ./tmplib.26680 library

1767894 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 15.1135+/-0.0103; mu= -28.2991+/- 0.679
 mean_var=691.2065+/-167.467, 0's: 0 Z-trim: 10  B-trim: 0 in 0/36
 Lambda= 0.0488

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0192  ( 1146 res)   msp04171                  (1146)  419   45 7.3e-05


>>mKIAA0192  ( 1146 res)   msp04171                       (1146 aa)
 initn: 2346 init1: 285 opt: 419  Z-score: 179.6  bits: 45.1 E(): 7.3e-05
Smith-Waterman score: 420;  31.339% identity (35.256% ungapped) in 351 aa overlap (526-852:774-1109)

         500       510       520       530       540          550  
mKIAA4 LGLAAQQQGMFDNAPLQALNLPTTYPALQGIPPVLLPGLNSPSLPGFTPANTAL---TSP
                                     .:: ::   :  :.  ..  ....   :. 
mKIAA0 STKGKKRSQPATKNEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLSYRQSSMGLYTQN
           750       760       770       780       790       800   

            560        570       580       590       600       610 
mKIAA4 KPNLMGLPSTTVPSP-GLPTSGLPNKPSSASLSSPTPAQATMAMAPQPPPQPQQPQPPVQ
       .:   : : .    :  :: . ::..:.  ..  ::  ...:.. :.      . .   :
mKIAA0 QPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVL-PTTMSTVMGLEPSS----YKTSVYRQ
           810       820       830        840       850            

             620       630       640       650       660       670 
mKIAA4 QPPPPPAAQQIPAPQLTPQQQRKDKDGEKGKEKEKAHKGKGEPLPVPKKEKGEAPPAATA
       : :  : .:..   ::  . : .   :... ..    .. :  : . .   . .  ..  
mKIAA0 QQPTVPQGQRL-RQQLQAKIQSQGMLGQSSVHQMTPSSSYG--LQTSQGYTSYVSHVGLQ
      860        870       880       890         900       910     

             680        690        700       710       720         
mKIAA4 TISAPLPAMEYAVDPA-QLQALQAAL-TSDPTALLTSQFLPYFVPGFSPYYAPQIPGALQ
         ..:  .:   : :. . :  :..  ...:: .  .. :     :.    ::    .: 
mKIAA0 QHTGPAGTM---VPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLT
         920          930       940       950       960       970  

     730               740       750       760          770        
mKIAA4 SGY------LQ--PMYGMEGLFPYSPALSQALMGLSPGSLL---QQYQQYQQSLQEAIQQ
       :        ::  ::.:   . : :    ::  :.   :.:   :: :: ::. :.  ::
mKIAA0 STQRFSHQTLQQTPMMGT--MTPLSAQGVQA--GVRSTSILPEQQQQQQQQQQQQQQQQQ
            980       990        1000        1010      1020        

      780       790          800           810       820       830 
mKIAA4 QQQQQQQQQQQQQQQQ---RQLQQQQQ----QQQQKVQQQQQQQQQPKASQTPVPQGPAS
       ::::::::::::::::   :: :::::    ::::. ::::::::: . .:    : : .
mKIAA0 QQQQQQQQQQQQQQQQYHIRQQQQQQQMLRQQQQQQQQQQQQQQQQQQQQQQQQQQQPHQ
     1030      1040      1050      1060      1070      1080        

             840       850       860       870       880       890 
mKIAA4 PDKDPAKESPKPEEQKNVPREVSPLLPKPPEEPEAESKSASADSLCDPFIVPKVQYKLVC
        ... :  .:.:. : .  :.                                       
mKIAA0 QQQQAAPPQPQPQSQPQFQRQGLQQTQQQQQTAALVRQLQQQLSNTQPQPSTNIFGRY  
     1090      1100      1110      1120      1130      1140        




1123 residues in 1 query   sequences
1767894 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:05:48 2006 done: Mon Mar 27 11:05:49 2006
 Scan time:  1.110 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]