FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0154.ptfa, 724 aa vs ./tmplib.26680 library 1768293 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.4752+/-0.0095; mu= -19.9247+/- 0.628 mean_var=466.4174+/-112.202, 0's: 0 Z-trim: 1 B-trim: 2 in 1/35 Lambda= 0.0594 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1080 ( 612 res) mpj01355 ( 612) 1169 115 3.1e-26 >>mKIAA1080 ( 612 res) mpj01355 (612 aa) initn: 1233 init1: 668 opt: 1169 Z-score: 563.4 bits: 114.6 E(): 3.1e-26 Smith-Waterman score: 1520; 41.413% identity (51.910% ungapped) in 722 aa overlap (2-716:22-604) 10 20 30 mKIAA0 GPGGCNMAEA---EGESLESWLNKATNPSNRQEDWEYIIG :.: . ::. . .:: ::::::.:: ..:: : mKIAA1 LRPQRWAGQMAATAVAAGTGSPAGTESAEGGPGAAAALELWLNKATDPSMAEQDWSAIQK 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 FCDQINKELEGPQIAVRLLAHKIQSPQEWEAVQALTVLEACMKNCGRRLHNEVGKFRFLN ::.:.: . :: : ::::::::::: ::. :::::: ::..::...:.::.:::::: mKIAA1 FCEQVNTDPSGPTHAPWLLAHKIQSPQEKEALYALTVLEICMNHCGEKFHSEVAKFRFLN 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 ELIKVVSPKYLGDRVSEKVKTKVIELLFSWTLALPEEAKIKDAYHMLKRQGIVQSDPPIP :::::.:::::: ..:::: .:::.:::::. .::. ::.:::.:::.:::...:: .: mKIAA1 ELIKVLSPKYLGAWATEKVKGRVIEILFSWTVWFPEDIKIRDAYQMLKKQGIIKQDPKLP 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA0 MDRTLIPSPPPRPKNPVFD-DEEKSKLLARLLKSKNPDDLQEANRLIKSMVKEDEARIQK ::. : : : : ::. .:: ::::::::.:::::..:.::: ::::::..:::.. . .: mKIAA1 MDKIL-PPPSPWPKS-IFDADEEKSKLLTRLLKSNHPEDLQAANRLIKNLVKEEQEKSEK 190 200 210 220 230 220 230 240 250 260 270 mKIAA0 VTKRLHTLEEVNNNVKLLHEMLLHYSQEYSSDADKELMKELFDRCENKRRTLFKLASETE :..:. ..::: ..:..:.::: : . . :.. .. ...:::. : :::.:::.: mKIAA1 VSRRVSAVEEVRSHVRVLREMLSMYRRPGHALPDQQALQVVYERCEKLRPTLFRLASDTT 240 250 260 270 280 290 280 290 300 310 320 330 mKIAA0 DNDNSLGDILQASDNLSRVINSYKTIIEGQIVNGEVTTSTMPDSEGNSHCGNQGALIDLA :.:..:..::::.: :.. . :: ..::.. : ::. . ::. mKIAA1 DDDDALAEILQANDLLTQGVRLYKQVVEGRV------------SAGNAVPAAVGAI---- 300 310 320 330 340 340 350 360 370 380 390 mKIAA0 ELDAPSNSSPALAPPTSGIPILPPPPQTSGPPRSRSSSQAEAPPGSDSTNNALSLLDEEL :: . : : . :.. . :.: ::: ..: mKIAA1 --PAPR-AFPNPEPCGLNCPLI----------------DLETP----------SLLHQDL 350 360 370 400 410 420 430 440 450 mKIAA0 LCLGLTDPAPTAPKESPGSSQWHLFQNEPPSDLDFFSPRPVPVASCPSDGPQLPPPVSTS ::..: .:: .:. : . :: .: : : . . mKIAA1 AALGIND-VPT--------------RNQ------------VVIPSCCNDKKQ---PGAIT 380 390 400 460 470 480 490 500 510 mKIAA0 SMSQAPLPAAFPAPVVPASAPTHSTGSFMFSSGPAPAL--AP-KAEPKGPEYPSSSTSHR :. . . :: . .:: :.:.: .: :. :: : : mKIAA1 LMGGG---------IQSLSADRNLLD--LFSPQPSPGLNYVPQKSIPK--EVP------- 410 420 430 440 520 530 540 550 560 570 mKIAA0 LDALDQLLEEAKVTSGLVKPVSCFSPGPTASPLLPASAPARPLLPFSTGPGSPLFQSQGS :: ::: : :: . ::.. mKIAA1 -------------------------PGTKASPGWSWEA----------GPLASSTASQNT 450 460 580 590 600 610 620 630 mKIAA0 PQKGPELSLASVHVPLESIKPSSALPVTAYDKNGFRILFHFAKECPPGRPDVLVVVVSML : :: : :::::.:::: :...::.::::::.::.. ::.::: :....:. mKIAA1 P-------LAHVFVPLESVKPSSLPPIVVYDRNGFRILLHFSQTGAPGHPDVKVLLLTMM 470 480 490 500 510 520 640 650 660 670 680 690 mKIAA0 NTAPLPVKSIVLQAAVPKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLLANPMKEKVRL .:: :: ....:.::::::.::::: :...: :::..:::.:.:..:: :: :: .:: mKIAA1 STATQPVWDVMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAVISQTLLLDNPHKEPIRL 530 540 550 560 570 580 700 710 720 mKIAA0 RYKLTFALGEQLSTELGEVDQFPPVEQWGNL :::::: : : .:.::: .:: mKIAA1 RYKLTFNQGGQPFSEVGEVKDFPDLAVLSTA 590 600 610 724 residues in 1 query sequences 1768293 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:13:19 2006 done: Mon Mar 27 10:13:20 2006 Scan time: 0.900 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]