FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4120.ptfa, 706 aa vs ./tmplib.26680 library 1768311 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 13.7340+/-0.00834; mu= -25.6665+/- 0.546 mean_var=567.3179+/-139.363, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.0538 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4224 ( 568 res) mbg06290 ( 568) 695 69 1.9e-12 >>mKIAA4224 ( 568 res) mbg06290 (568 aa) initn: 598 init1: 371 opt: 695 Z-score: 316.0 bits: 68.7 E(): 1.9e-12 Smith-Waterman score: 784; 31.753% identity (40.700% ungapped) in 696 aa overlap (20-706:17-568) 10 20 30 40 50 mKIAA4 LEPGGQRPGRISGRKCWGTRG-GSGDLETTPSLPTLVSS-GMEDPSE---EAEQPSGDPG :: : : . : .:. . : .: . : .. . : mKIAA4 GADAARSLTGLAFREMRGQGRGHARWPAPLRSLLRAFGPQDTTTGGLEQDEMDQTPP 10 20 30 40 50 60 70 80 90 100 110 mKIAA4 MGMDSVEAGDTTPPTKRKSKFSALGKIFKPWKWRKKKSSDKFKETSEDGED--SGKLSHA . . .: :::..:.::...::.:::::::::::. .:.:.:. : .:. .. mKIAA4 ARSEPLVSGIRTPPVRRNSKLATLGRIFKPWKWRKKKN-EKLKQTTSALEKKMAGRQGRE 60 70 80 90 100 110 120 130 140 150 160 170 mKIAA4 ALKNGHTTPIGSARSSSPVLVEEEPERSLRNLTPEEESKKRLGSTGSQPNSEAEPGPEHA : . . : . . .: . ... : : .. : : :.::.: . : ... mKIAA4 ELIKQGLLEMMEQDSENKACSPKEGSQPVQSEPPAGE-QETLTSEGAQPGSPSASGTDQV 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA4 PKQPLLPPKRPLSSSCEAKEVPAGSTARSVSSTSGSTTVTSAATTAATDMTKTVKSFVGP .. :: :... . .:..:::. ... :: :. . : ..: mKIAA4 SQDELLSSDAHLDDTAN---IPSASTAEEADA--GSLLPTTDEPSQA---------LAGS 180 190 200 210 220 240 250 260 270 280 290 mKIAA4 TPAPAPAPRTLPAAPASANTAATTTAPAKQPPIPPPKPAQRNSNPIIAELSQAMNSGTVL .: ::.: ... .: : :::: ... .. . .. :. .: mKIAA4 DSLDSP-PRSLE------RSVSQLPSPPLLPT-PPPKASSKATKNVTGQ--AALFQG--- 230 240 250 260 300 310 320 330 340 350 mKIAA4 SKPSPPLPPKRGIPSTSIPSLEPAASFTTKTANDQREKTVSLCLEPPLIIPPSSPSPPLP :: . . ::: :. : : .:: mKIAA4 --PS-------------MKNNEPA-------------------LRGQLATPTGSP----- 270 280 360 370 380 390 400 410 mKIAA4 THIPPEPPRSPLVPAKTFQIVPEVEFSSSSDLFQDISQQEDQKTEVPKKIQDQSFGESHI :. . :: :.. .. :.. . .. :: : .. . ::: .: mKIAA4 -HVTTV--HRPLPPSR---VMEELHRALATKHRQDSFQGRECRGS-PKKRMD-------- 290 300 310 320 330 420 430 440 450 460 470 mKIAA4 PSRLPPLPLHIRIQQALTSPLPVTPPLEGTHRAHSLLFENSDSFSEDTGTLGRTRSLPIT .:... :: . .: .: .. : :. ::. : . mKIAA4 ----------VRLSR--TSSME-----RGKERDEAWSF---DGASENKWTATK------- 340 350 360 480 490 500 510 520 530 mKIAA4 IEMLKVPDDEEEEQTCPFVEDVTSTSATPSLPLCLREEEKESDSDSEGPIKYRDEEEDDD :.::.... : : : :.. . :.::: .: mKIAA4 -------DSEENKEN-----------------LMLSSELKDD------MLLYQDEEALND 370 380 390 540 550 560 570 580 590 mKIAA4 DDESHQSALANRVKRKDTLAMKLSSRPSEPET-NLNSWPRKSKEEWNEIRHQIGNTLIRR : :. : .:. ::.:: .:::. : . : .::.. :: .:::.:: : . mKIAA4 ---SIISGTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRRTDEERQEIRQQIEMKL-SK 400 410 420 430 440 450 600 610 620 630 640 650 mKIAA4 LSQRPTAEELEQRNILQPKNEADRQAEKREIKRRLTRKLSQRPTVAELLARKIL-RFNEY :::::..::::.::::. .:. .: :.::::.::::::.::::: :: :::: ::..: mKIAA4 LSQRPAVEELERRNILKQRNDQTEQEERREIKQRLTRKLNQRPTVDELRDRKILIRFSDY 460 470 480 490 500 510 660 670 680 690 700 mKIAA4 VEVTDAHDYDRRADKPWTKLTPADKAAIRKELNEFKSSEMEVHVDSKHFTRYHRP :::. :.:::::::::::.:. ::::::::::::.::.:::::..:::.::.::: mKIAA4 VEVARAQDYDRRADKPWTRLSAADKAAIRKELNEYKSNEMEVHASSKHLTRFHRP 520 530 540 550 560 706 residues in 1 query sequences 1768311 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:02:29 2006 done: Mon Mar 27 11:02:30 2006 Scan time: 0.900 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]