FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA1543.ptfa, 985 aa
vs ./tmplib.26680 library
1768032 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 10.5207+/-0.00805; mu= -3.5404+/- 0.531
mean_var=504.9083+/-121.026, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36
Lambda= 0.0571
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 39, opt: 27, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA1078 ( 813 res) mbg05672 ( 813) 713 74 1.2e-13
>>mKIAA1078 ( 813 res) mbg05672 (813 aa)
initn: 1515 init1: 686 opt: 713 Z-score: 337.5 bits: 73.6 E(): 1.2e-13
Smith-Waterman score: 1251; 36.582% identity (51.092% ungapped) in 831 aa overlap (358-979:4-807)
330 340 350 360 370 380
mKIAA1 ENPSKSSPCSTGEILKPPPPSEGSPKAVASSPAANNSEVKMTSFAERK-KQLVKAEAES-
: :...: ::::::::.: ..: .....:
mKIAA1 QPGSSASSSSGVKMTSFAEQKFRKLNHTDGKSS
10 20 30
390 400 410
mKIAA1 GLGSPTSTP---------------------VAP-----EALSSEMSELGARLEEKRRAIE
: .: .:: ::: . :.::: .: ::::::::::
mKIAA1 GSSSQKTTPEGSELNIPHVVSWAQIPEEAGVAPGRDTTQLLASEMVHLRMRLEEKRRAIE
40 50 60 70 80 90
420 430 440 450 460
mKIAA1 AQKRRIEAIFAKHRQRLGKSAFLQV--------QP--REAAGEAEEEAELGSVPGGERPA
:::...:: :.:.::..:..::: : .: .:::: .:.. . :
mKIAA1 AQKKKMEAAFTKQRQKMGRTAFLTVVKKKGEGISPLREEAAGAEDEKVYTDRAKERESQK
100 110 120 130 140 150
470 480 490 500
mKIAA1 GEGQGEPSLR--HKSVTFSPD------LGPVPPE---------------G-LGDYNRAVS
.:: :: ..:. : :: :: : . .:....
mKIAA1 MDGQRSKSLADIKESMETPPGRWLKSPTTPVDPERQWNLTSPSEETLNEGEILEYTKSIE
160 170 180 190 200 210
510 520 530 540 550
mKIAA1 KLSAALSSLQRDMQRLTDQQQRLLAPPEAPG-----PAPPPAAWV---IPGPATGPKAAS
::...: ::..::::. ::. :. : . : : : . : : .::.
mKIAA1 KLNSSLHFLQQEMQRLSLQQEMLMQMREQQAWVISPPQPSPQKQIRDFKPRQAGLSSAAA
220 230 240 250 260 270
560 570 580 590 600 610
mKIAA1 P----SPARRAPAARRSPGPGPSPTPRSPKHARPAELKLAPLTRVLTPPHDVDSLPHLRK
: :: :. . : . : . .. . :: :::..::.:.::::..:::::.::.
mKIAA1 PFSSDSPRPTHPSPQSSTRKSASFSVKNQRTPRPNELKITPLNRTLTPPRSVDSLPRLRR
280 290 300 310 320 330
620 630 640 650
mKIAA1 FSPSQVPVQTRSSILLSE-GTPPEEPTTK--------------------PALIEI-PLAS
:::::::.:::: . ... : : .:: : :. :: :. :
mKIAA1 FSPSQVPIQTRSFVCFGDDGEPQKEPKQKEEIKKEPSECKGTLGPCDHNPGEKEIKPVES
340 350 360 370 380 390
660 670
mKIAA1 -----LGEPAAD-------EE-----------------------------GDGSPPGAED
:..: .. :. .: .:: :
mKIAA1 TVSEVLSQPITETVCVTPNEDQLSQPTEPPPKPVFPPTAPKNVNLIEVSLSDLKPPEKAD
400 410 420 430 440 450
680 690 700 710 720
mKIAA1 ----SLEEEASSE---GEPRSGLGFFYKDEDKPEDEMAQKRASLLERQQRRVEEARRRKQ
.:. :...: . . :::.::..: :..::.:::.:::.. :: .:.. :::
mKIAA1 VSVEKLDGESDKEQFDDDQKVCCGFFFKDDQKAENDMAMKRAALLEKRLRREKETQLRKQ
460 470 480 490 500 510
730 740 750 760 770 780
mKIAA1 WQEAEKEQKREEAARLAQEAPGLAFTTPVVASAAPVATLAPTTRAMAPAEEEVGPRRGDF
::: :.:.::. : ..: .:. :: .:
mKIAA1 QLEAEMEHKKEETRRKTEEE--------------------------RQKKEDERARR-EF
520 530 540
790 800 810
mKIAA1 TRLEYERRAQLKLMDDLDKVLRPRASGT-----------------------GGPG-----
: :: :: :::::.:.: :..:: ... : ::
mKIAA1 IRQEYMRRKQLKLMEDMDTVIKPRPQAAKQKKQRPKSIHRDHIESPKTPIKGPPGSRISR
550 560 570 580 590 600
820 830
mKIAA1 --------------------RGGRRATR---------P-----RSGCCD--DSALARSPA
..:.:. : : :.: : ... . : :
mKIAA1 VFSVSSLSLASLNTGDSESVHSGKRTPRSESVEGFLSPSRCGSRNGEKDWENASTTSSVA
610 620 630 640 650 660
840 850 860 870 880 890
mKIAA1 RGL-LGGPRLYKEPSAKSNKFIIHNALSHCCLAGKVNEPQKNRILEEIEKSKANHFLILF
: ::.::::::::::: ::.:::.:::::::::: ::..::::.::: ::.:::::
mKIAA1 SGTEYTGPKLYKEPSAKSNKHIIQNALAHCCLAGKVNEGQKKKILEEMEKSDANNFLILF
670 680 690 700 710 720
900 910 920 930 940 950
mKIAA1 RDSSCQFRALYTLSGETEELSRLAGYGPRTVTPAMVEGIYKYNSDRKRFTQIPAKTMSMS
:::.::::.::: ::::...:.: ::...: :.::.::::::::.:..:::::.: :
mKIAA1 RDSGCQFRSLYTYCPETEEINKLTGIGPKSITKKMIEGLYKYNSDRKQFSHIPAKTLSAS
730 740 750 760 770 780
960 970 980
mKIAA1 VDAFTIQGHLWQSKKPTTPKKGGGTPK
:::.::..::::.:.:.::::
mKIAA1 VDAITIHSHLWQTKRPVTPKKLLPTKA
790 800 810
985 residues in 1 query sequences
1768032 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:47:44 2006 done: Mon Mar 27 10:47:45 2006
Scan time: 1.060 Display time: 0.070
Function used was FASTA [version 3.4t11 Apr 17, 2002]