FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1543.ptfa, 985 aa vs ./tmplib.26680 library 1768032 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 10.5207+/-0.00805; mu= -3.5404+/- 0.531 mean_var=504.9083+/-121.026, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.0571 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1078 ( 813 res) mbg05672 ( 813) 713 74 1.2e-13 >>mKIAA1078 ( 813 res) mbg05672 (813 aa) initn: 1515 init1: 686 opt: 713 Z-score: 337.5 bits: 73.6 E(): 1.2e-13 Smith-Waterman score: 1251; 36.582% identity (51.092% ungapped) in 831 aa overlap (358-979:4-807) 330 340 350 360 370 380 mKIAA1 ENPSKSSPCSTGEILKPPPPSEGSPKAVASSPAANNSEVKMTSFAERK-KQLVKAEAES- : :...: ::::::::.: ..: .....: mKIAA1 QPGSSASSSSGVKMTSFAEQKFRKLNHTDGKSS 10 20 30 390 400 410 mKIAA1 GLGSPTSTP---------------------VAP-----EALSSEMSELGARLEEKRRAIE : .: .:: ::: . :.::: .: :::::::::: mKIAA1 GSSSQKTTPEGSELNIPHVVSWAQIPEEAGVAPGRDTTQLLASEMVHLRMRLEEKRRAIE 40 50 60 70 80 90 420 430 440 450 460 mKIAA1 AQKRRIEAIFAKHRQRLGKSAFLQV--------QP--REAAGEAEEEAELGSVPGGERPA :::...:: :.:.::..:..::: : .: .:::: .:.. . : mKIAA1 AQKKKMEAAFTKQRQKMGRTAFLTVVKKKGEGISPLREEAAGAEDEKVYTDRAKERESQK 100 110 120 130 140 150 470 480 490 500 mKIAA1 GEGQGEPSLR--HKSVTFSPD------LGPVPPE---------------G-LGDYNRAVS .:: :: ..:. : :: :: : . .:.... mKIAA1 MDGQRSKSLADIKESMETPPGRWLKSPTTPVDPERQWNLTSPSEETLNEGEILEYTKSIE 160 170 180 190 200 210 510 520 530 540 550 mKIAA1 KLSAALSSLQRDMQRLTDQQQRLLAPPEAPG-----PAPPPAAWV---IPGPATGPKAAS ::...: ::..::::. ::. :. : . : : : . : : .::. mKIAA1 KLNSSLHFLQQEMQRLSLQQEMLMQMREQQAWVISPPQPSPQKQIRDFKPRQAGLSSAAA 220 230 240 250 260 270 560 570 580 590 600 610 mKIAA1 P----SPARRAPAARRSPGPGPSPTPRSPKHARPAELKLAPLTRVLTPPHDVDSLPHLRK : :: :. . : . : . .. . :: :::..::.:.::::..:::::.::. mKIAA1 PFSSDSPRPTHPSPQSSTRKSASFSVKNQRTPRPNELKITPLNRTLTPPRSVDSLPRLRR 280 290 300 310 320 330 620 630 640 650 mKIAA1 FSPSQVPVQTRSSILLSE-GTPPEEPTTK--------------------PALIEI-PLAS :::::::.:::: . ... : : .:: : :. :: :. : mKIAA1 FSPSQVPIQTRSFVCFGDDGEPQKEPKQKEEIKKEPSECKGTLGPCDHNPGEKEIKPVES 340 350 360 370 380 390 660 670 mKIAA1 -----LGEPAAD-------EE-----------------------------GDGSPPGAED :..: .. :. .: .:: : mKIAA1 TVSEVLSQPITETVCVTPNEDQLSQPTEPPPKPVFPPTAPKNVNLIEVSLSDLKPPEKAD 400 410 420 430 440 450 680 690 700 710 720 mKIAA1 ----SLEEEASSE---GEPRSGLGFFYKDEDKPEDEMAQKRASLLERQQRRVEEARRRKQ .:. :...: . . :::.::..: :..::.:::.:::.. :: .:.. ::: mKIAA1 VSVEKLDGESDKEQFDDDQKVCCGFFFKDDQKAENDMAMKRAALLEKRLRREKETQLRKQ 460 470 480 490 500 510 730 740 750 760 770 780 mKIAA1 WQEAEKEQKREEAARLAQEAPGLAFTTPVVASAAPVATLAPTTRAMAPAEEEVGPRRGDF ::: :.:.::. : ..: .:. :: .: mKIAA1 QLEAEMEHKKEETRRKTEEE--------------------------RQKKEDERARR-EF 520 530 540 790 800 810 mKIAA1 TRLEYERRAQLKLMDDLDKVLRPRASGT-----------------------GGPG----- : :: :: :::::.:.: :..:: ... : :: mKIAA1 IRQEYMRRKQLKLMEDMDTVIKPRPQAAKQKKQRPKSIHRDHIESPKTPIKGPPGSRISR 550 560 570 580 590 600 820 830 mKIAA1 --------------------RGGRRATR---------P-----RSGCCD--DSALARSPA ..:.:. : : :.: : ... . : : mKIAA1 VFSVSSLSLASLNTGDSESVHSGKRTPRSESVEGFLSPSRCGSRNGEKDWENASTTSSVA 610 620 630 640 650 660 840 850 860 870 880 890 mKIAA1 RGL-LGGPRLYKEPSAKSNKFIIHNALSHCCLAGKVNEPQKNRILEEIEKSKANHFLILF : ::.::::::::::: ::.:::.:::::::::: ::..::::.::: ::.::::: mKIAA1 SGTEYTGPKLYKEPSAKSNKHIIQNALAHCCLAGKVNEGQKKKILEEMEKSDANNFLILF 670 680 690 700 710 720 900 910 920 930 940 950 mKIAA1 RDSSCQFRALYTLSGETEELSRLAGYGPRTVTPAMVEGIYKYNSDRKRFTQIPAKTMSMS :::.::::.::: ::::...:.: ::...: :.::.::::::::.:..:::::.: : mKIAA1 RDSGCQFRSLYTYCPETEEINKLTGIGPKSITKKMIEGLYKYNSDRKQFSHIPAKTLSAS 730 740 750 760 770 780 960 970 980 mKIAA1 VDAFTIQGHLWQSKKPTTPKKGGGTPK :::.::..::::.:.:.:::: mKIAA1 VDAITIHSHLWQTKRPVTPKKLLPTKA 790 800 810 985 residues in 1 query sequences 1768032 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:47:44 2006 done: Mon Mar 27 10:47:45 2006 Scan time: 1.060 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]