FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0843.ptfa, 690 aa vs ./tmplib.26680 library 1768327 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.3938+/-0.00585; mu= 9.9953+/- 0.390 mean_var=206.5265+/-50.895, 0's: 0 Z-trim: 4 B-trim: 87 in 1/35 Lambda= 0.0892 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0059 ( 670 res) mbg06726 ( 670) 1974 267 3.8e-72 mKIAA0613 ( 730 res) mfj11041 ( 730) 243 44 4.9e-05 >>mKIAA0059 ( 670 res) mbg06726 (670 aa) initn: 1900 init1: 728 opt: 1974 Z-score: 1387.7 bits: 267.2 E(): 3.8e-72 Smith-Waterman score: 2324; 51.130% identity (59.344% ungapped) in 708 aa overlap (19-690:25-670) 10 20 30 40 50 mKIAA0 TTQSKGITMNTSIPYQQSPYSPRGGSN--VIQCYRCGDTCKGEVVRVHNNHFHI : .:. .:. ::.:..::. :::::.::...:::: mKIAA0 SSFLLLSVPSAKDPVAMVKEKVAHPQDPHHSSEKPVIHCHKCGEPCKGEVLRVQTKHFHI 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA0 RCFTCQVCGCGLAQSGFFFKNQEYICTQDYQQLYGTRCDSCRDFITGEVISALGRTYHPK .::::.:::: :::.:::.:: .:.:: :::..::::: .: .:. :::..:::.::::. mKIAA0 KCFTCKVCGCDLAQGGFFIKNGDYLCTLDYQRMYGTRCHGCGEFVEGEVVTALGKTYHPN 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA0 CFVCSLCRKPFPIGDKVTFSGKECVCQTCSQSMTSSKPIKIRGPSHCAGCKEEIKHGQSL ::.:..:..::: ::.:::.:..:.:: :.: :.:: : . :.:::: ..::.::.: mKIAA0 CFACTICKRPFPPGDRVTFNGRDCLCQLCAQPMSSS-PKEASCSSNCAGCGRDIKNGQAL 130 140 150 160 170 180 190 200 210 220 230 mKIAA0 LALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHSQFGIKCETCDRYISGRVLEA ::::::::..::::..:. .:::::::::: ::::.::.. ::.:::.: ..:.:.:::: mKIAA0 LALDKQWHLGCFKCKSCGKVLTGEYISKDGSPYCEKDYQGLFGVKCEACHQFITGKVLEA 180 190 200 210 220 230 240 250 260 270 280 290 mKIAA0 GGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI-SP : :::::.:::: ::.::::::::::: :: :::: :::....:.::. ::: :: : mKIAA0 GDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYSR 240 250 260 270 280 290 300 310 320 330 340 350 mKIAA0 PGSSI-GSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEMLE ::::: :::...: ::::::::.::::::.::::.::...:::::.::: .. : mKIAA0 PGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYEDKQE 300 310 320 330 340 350 360 370 380 390 400 mKIAA0 RCGYGESLGTLSPY-SQDIYENLDLRQR---RASSPGYIDSPTYSRQGMSPTFSRSP-HY : . ::: :::: : . :. :.:.: :..: : :.::.:::....:: :::: :. mKIAA0 RQSLGESPRTLSPTPSAEGYQ--DVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHF 360 370 380 390 400 410 410 420 430 440 450 460 mKIAA0 YRSG--PESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYKRHGDLSTA .: : : :::.:: . : : ::: :::::::.: ::::::::::.:: mKIAA0 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQHGTDPRR 420 430 440 450 460 470 470 480 490 500 510 520 mKIAA0 TKSKTSEDISQASKYSPAYSPDPYYASESEYWTYHGSPKVPRARRFSSGGEEEDFDRSMH .: :: : : : :... ::. . mKIAA0 RSSGREED-------------------EEELL---------RRRQLQ---EEQ-----LM 480 490 500 530 540 550 560 570 580 mKIAA0 KLQSGIGRLILKEEMKARSSSYADPWTPPRSSTSSREALHTTGYEMSFNGSPRSHYLADS ::.::.:.:::::::. .: :.: .:: :. .... :: : : mKIAA0 KLNSGLGQLILKEEMEKESRE--------RASLASR-------YDSPLHSA--SH--APS 510 520 530 540 590 600 610 620 mKIAA0 DPLISKSASLPAYRRNGLHRTPSADLFHYDSMNAVNWGMREY------------------ ::..:::.: .::::: :.:. .:.:.. .. :.:.: mKIAA0 ----SKTSSLPGYGKNGLHRPVSTDFAQYNSYGDISGGVRDYQTLPDGHMPAVRMDRGVS 550 560 570 580 590 630 640 650 660 670 mKIAA0 -------KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFERLALW ::.:::.:.::.::::.. .:::::::::::. : :...:::.:.::..: :: mKIAA0 MPNMLEPKIFPYEMLMVTNRGRNKILRDVDRTRLERHLAPEVFWEIFGMSIQEFDKLPLW 600 610 620 630 640 650 680 690 mKIAA0 KRNELKKQARLF .::..::.:.:: mKIAA0 RRNDMKKKAKLF 660 670 >>mKIAA0613 ( 730 res) mfj11041 (730 aa) initn: 276 init1: 125 opt: 243 Z-score: 182.8 bits: 44.3 E(): 4.9e-05 Smith-Waterman score: 370; 33.508% identity (37.870% ungapped) in 191 aa overlap (90-275:554-727) 60 70 80 90 100 110 mKIAA0 CGCGLAQSGFFFKNQEYICTQDYQQLYGTRCDSCRDFITGEVISALGRTYHPKCFVCSLC : : . : : . :.::..::. : :. : mKIAA0 YNPTGPQVTPLARGTFQRAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFNCAYC 530 540 550 560 570 580 120 130 140 150 160 170 mKIAA0 RKPFPIGDKVTFSGKE--CVCQTCSQSMTSSKPIKIRGPSHCAGCKEEIKHGQSLLALDK . ..: : : .. :. : ... . :: :: :. .: :. . :: . mKIAA0 KTS--LAD-VCFVEEQNNVYCERCYEQFFA--PI-------CAKCNTKI-MGEVMHALRQ 590 600 610 620 630 180 190 200 210 220 230 mKIAA0 QWHVSCFKCQTCSVIL-TGEYISKDGVPYCESDYHSQFGIKCETCDRYI-SG-RVLEAGG ::..:: : .:. . .. . .:: ::::.:: . :. ::. :: . .: . .:: : mKIAA0 TWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALG 640 650 660 670 680 690 240 250 260 270 280 290 mKIAA0 KHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSISPPGS . .: :: :. :: . ::. .: :. .:.::. :.: mKIAA0 HTWHDTCFICAVCHVNL-EGQPFY---SKKDKPLCKKHAHAINV 700 710 720 730 300 310 320 330 340 350 mKIAA0 SIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEMLERCGY 690 residues in 1 query sequences 1768327 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:30:06 2006 done: Mon Mar 27 10:30:07 2006 Scan time: 0.810 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]