FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1645.ptfa, 384 aa vs ./tmplib.26680 library 1768633 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.5376+/-0.00544; mu= 11.8806+/- 0.364 mean_var=141.8201+/-33.705, 0's: 0 Z-trim: 8 B-trim: 0 in 0/36 Lambda= 0.1077 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1942 ( 431 res) mej02524 ( 431) 164 37 0.0035 mKIAA4167 ( 342 res) mpj04828 ( 342) 155 35 0.008 >>mKIAA1942 ( 431 res) mej02524 (431 aa) initn: 105 init1: 65 opt: 164 Z-score: 149.5 bits: 36.6 E(): 0.0035 Smith-Waterman score: 164; 23.673% identity (26.977% ungapped) in 245 aa overlap (112-344:186-412) 90 100 110 120 130 mKIAA1 TLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTR-RIVTTLNGHGGQGVI--WLKTLPQGH :.: . . .. :: :.: : .: mKIAA1 EKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPG-- 160 170 180 190 200 210 140 150 160 170 180 190 mKIAA1 QLLSQGRDLRLCLWDLEEGRNTIMDSVQLDSVGFCRGSILVRGQQCWMLAVPGKGSDE-V .::. . . :: :: . .: : :: :. .. . . . ..: . mKIAA1 RLLTGDCQKNVHLWTPTEGGSWNVD--QRPFVGHTRSVEDLQWSPTEDTVFASCSADASI 220 230 240 250 260 270 200 210 220 230 240 250 mKIAA1 QILEM---PSKTSVCTLKPEADARPGMPMCLGLWQTNSSLRPLLLAGYEDGSVTLWDISE .: .. :.:. : : : :. : .. : : .:.::.: .::.. .::. . mKIAA1 RIWDIRAAPGKA--CMLTT-ATAHDGDVNVIS-W---SRREPFLLSGGDDGALKVWDLRQ 280 290 300 310 320 260 270 280 290 300 mKIAA1 RKVCSQITC---HEEPVMGLDFDSQKAKGISGSAG--KVLAVWSLDDQQSLQVKKTHELT : : .. : :: .... : . :. ...: . .. :.: ... . .:. : mKIAA1 FKSGSPVATFKQHMAPVTSVEWHPQDS-GVFAASGADNQITQWDLAVERDPESGETE--T 330 340 350 360 370 380 310 320 330 340 350 360 mKIAA1 NPGIAEVTIRPDHKILATAGWDHRIRVFHWRTMKPLAVLAFHSAPVYCVAFAADGLLAAG .::.: . :.. ... : . .. .::. . : mKIAA1 DPGLAAL---PQQLLFVHQG-ETDLKELHWHPQCPGVLISTALSGFTVFRTISV 390 400 410 420 430 370 380 mKIAA1 SKDQRISIWSLYPCP >>mKIAA4167 ( 342 res) mpj04828 (342 aa) initn: 136 init1: 136 opt: 155 Z-score: 143.0 bits: 35.1 E(): 0.008 Smith-Waterman score: 243; 22.305% identity (24.793% ungapped) in 269 aa overlap (119-380:48-296) 90 100 110 120 130 140 mKIAA1 SQAAGNPLLFSGSQNGLVHIWSLQTRRIVTTLNGHGGQGVIWLKTLPQGHQLLSQGRDLR :: ::.. .. .: :.:. : :.. : mKIAA4 EHLPAERAQSLLSAPRREEEPQKPNYALRLTLAGHSA-AISSVKFSPNGEWLASSAADAL 20 30 40 50 60 70 150 160 170 180 190 200 mKIAA1 LCLWDLEEG--RNTIMD-SVQLDSVGFCRGSILVRGQQCWMLAVPGKGSDEVQILEMPSK . .: .: ..:.. :.....:.. : . : .. . ... .: : mKIAA4 IIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRL---------VSASDDKTLKVWDMRSG 80 90 100 110 120 210 220 230 240 250 260 mKIAA1 TSVCTLKPEADARPGMPMCLGLWQTNSSLRPLLLAGYEDGSVTLWDISERKVCSQITCHE . ::: ..: . .: . .. :...: : :: .:... : . .. : mKIAA4 KCLKTLKGHSD----FVFCCDFNPPSN----LIVSGSFDESVKIWEVKTGKCLKTLSAHS 130 140 150 160 170 270 280 290 300 310 320 mKIAA1 EPVMGLDFDSQKAKGISGSAGKVLAVWSLDDQQSLQVKKTHELTNPGIAEVTIRPDHKIL .:. ...:. . . .::: . .:. . : : . . :: .. : . :. : . mKIAA4 DPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCL--RTLADEGNPPVSFVKFSPNGKYI 180 190 200 210 220 230 330 340 350 360 370 380 mKIAA1 ATAGWDHRIRVFHWRTMKPLAVLAFHSAPVYCV--AFAADG--LLAAGSKDQRISIWSLY :: :. .... . . : . . :. ::. .:.. : ...::.:. . ::.: mKIAA4 LTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQ 240 250 260 270 280 290 mKIAA1 PCP mKIAA4 TKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKTIKVWSSDC 300 310 320 330 340 384 residues in 1 query sequences 1768633 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:50:20 2006 done: Mon Mar 27 10:50:20 2006 Scan time: 0.620 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]