# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj18089.fasta.nr -Q ../query/mKIAA4197.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4197, 244 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920347 sequences Expectation_n fit: rho(ln(x))= 5.5378+/-0.000183; mu= 6.4638+/- 0.010 mean_var=74.8420+/-14.416, 0's: 46 Z-trim: 52 B-trim: 0 in 0/67 Lambda= 0.148252 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|825473|gb|AAA67106.1| sodium channel 25 ( 309) 1578 346.4 3.2e-93 gi|187957230|gb|AAI58049.1| Scn9a protein [Mus mus (1973) 1578 346.8 1.5e-92 gi|123232657|emb|CAM23211.1| sodium channel voltag (1973) 1578 346.8 1.5e-92 gi|125630309|ref|NP_061340.2| sodium channel, volt (1975) 1578 346.8 1.5e-92 gi|219521476|gb|AAI72147.1| Unknown (protein for M (1984) 1578 346.8 1.5e-92 gi|122066139|sp|Q62205.2|SCN9A_MOUSE RecName: Full (1984) 1578 346.8 1.5e-92 gi|55976160|sp|O08562.1|SCN9A_RAT RecName: Full=So (1984) 1550 340.9 9.4e-91 gi|149730681|ref|XP_001496473.1| PREDICTED: simila (1975) 1496 329.3 2.8e-87 gi|74004480|ref|XP_858990.1| PREDICTED: similar to (1133) 1491 328.1 3.7e-87 gi|74004476|ref|XP_858910.1| PREDICTED: similar to (1137) 1491 328.1 3.8e-87 gi|74004478|ref|XP_858947.1| PREDICTED: similar to (1138) 1491 328.1 3.8e-87 gi|74004482|ref|XP_859026.1| PREDICTED: similar to (1975) 1491 328.2 5.9e-87 gi|74004484|ref|XP_545503.2| PREDICTED: similar to (1986) 1491 328.2 5.9e-87 gi|160707935|ref|NP_001104257.1| sodium channel, v (1987) 1491 328.2 5.9e-87 gi|119631719|gb|EAX11314.1| sodium channel, voltag (1339) 1485 326.9 1e-86 gi|758110|emb|CAA58042.1| sodium channel alpha sub (1977) 1485 327.0 1.4e-86 gi|55976302|sp|Q15858.2|SCN9A_HUMAN RecName: Full= (1988) 1485 327.0 1.4e-86 gi|109099930|ref|XP_001101662.1| PREDICTED: simila (1975) 1480 325.9 3e-86 gi|55976305|sp|Q28644.1|SCN9A_RABIT RecName: Full= (1984) 1475 324.8 6.4e-86 gi|26332721|dbj|BAC30078.1| unnamed protein produc ( 253) 1351 297.8 1.1e-78 gi|26328015|dbj|BAC27748.1| unnamed protein produc ( 404) 1351 297.9 1.7e-78 gi|148695059|gb|EDL27006.1| mCG129387 [Mus musculu (1977) 1351 298.3 6.1e-78 gi|224960|prf||1204264B Na channel II protein (2005) 1351 298.3 6.2e-78 gi|116448|sp|P04775.1|SCN2A_RAT RecName: Full=Sodi (2005) 1351 298.3 6.2e-78 gi|149022132|gb|EDL79026.1| rCG26977, isoform CRA_ (2005) 1351 298.3 6.2e-78 gi|123123541|emb|CAM15654.1| sodium channel voltag (2006) 1351 298.3 6.2e-78 gi|126326263|ref|XP_001367197.1| PREDICTED: simila (2007) 1340 295.9 3.2e-77 gi|126326265|ref|XP_001367245.1| PREDICTED: simila (2007) 1340 295.9 3.2e-77 gi|224054946|ref|XP_002197661.1| PREDICTED: sodium (1961) 1339 295.7 3.6e-77 gi|224054942|ref|XP_002197655.1| PREDICTED: sodium (1961) 1339 295.7 3.6e-77 gi|224054936|ref|XP_002197631.1| PREDICTED: sodium (2007) 1339 295.7 3.7e-77 gi|224054940|ref|XP_002197640.1| PREDICTED: sodium (2007) 1339 295.7 3.7e-77 gi|118093618|ref|XP_001233892.1| PREDICTED: simila (2006) 1333 294.5 8.9e-77 gi|118093616|ref|XP_422025.2| PREDICTED: similar t (2006) 1333 294.5 8.9e-77 gi|74004438|ref|XP_858169.1| PREDICTED: similar to (1271) 1327 293.0 1.5e-76 gi|74004446|ref|XP_858328.1| PREDICTED: similar to (1939) 1327 293.2 2.1e-76 gi|74004452|ref|XP_858448.1| PREDICTED: similar to (1957) 1327 293.2 2.1e-76 gi|74004448|ref|XP_858370.1| PREDICTED: similar to (1957) 1327 293.2 2.1e-76 gi|74004454|ref|XP_858480.1| PREDICTED: similar to (1957) 1327 293.2 2.1e-76 gi|74004440|ref|XP_858206.1| PREDICTED: similar to (1958) 1327 293.2 2.1e-76 gi|74004442|ref|XP_858252.1| PREDICTED: similar to (1960) 1327 293.2 2.1e-76 gi|74004444|ref|XP_858288.1| PREDICTED: similar to (1965) 1327 293.2 2.1e-76 gi|74004456|ref|XP_858516.1| PREDICTED: similar to (1989) 1327 293.2 2.2e-76 gi|74004450|ref|XP_858407.1| PREDICTED: similar to (1991) 1327 293.2 2.2e-76 gi|74004462|ref|XP_858637.1| PREDICTED: similar to (2006) 1327 293.2 2.2e-76 gi|74004436|ref|XP_858129.1| PREDICTED: similar to (2006) 1327 293.2 2.2e-76 gi|74004458|ref|XP_849362.1| PREDICTED: similar to (2012) 1327 293.2 2.2e-76 gi|74004460|ref|XP_858594.1| PREDICTED: similar to (2017) 1327 293.2 2.2e-76 gi|149730669|ref|XP_001495738.1| PREDICTED: simila (1957) 1320 291.7 6e-76 gi|221136923|ref|NP_001137581.1| sodium channel, v (2006) 1320 291.7 6.1e-76 >>gi|825473|gb|AAA67106.1| sodium channel 25 (309 aa) initn: 1578 init1: 1578 opt: 1578 Z-score: 1829.9 bits: 346.4 E(): 3.2e-93 Smith-Waterman score: 1578; 100.000% identity (100.000% similar) in 244 aa overlap (1-244:66-309) 10 20 30 mKIAA4 YIIISFLVVVNMYIAVILENFSVATEESTE :::::::::::::::::::::::::::::: gi|825 PDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTE 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA4 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA4 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS 160 170 180 190 200 210 160 170 180 190 200 210 mKIAA4 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST 220 230 240 250 260 270 220 230 240 mKIAA4 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK :::::::::::::::::::::::::::::::::: gi|825 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK 280 290 300 >>gi|187957230|gb|AAI58049.1| Scn9a protein [Mus musculu (1973 aa) initn: 1578 init1: 1578 opt: 1578 Z-score: 1818.0 bits: 346.8 E(): 1.5e-92 Smith-Waterman score: 1578; 100.000% identity (100.000% similar) in 244 aa overlap (1-244:1730-1973) 10 20 30 mKIAA4 YIIISFLVVVNMYIAVILENFSVATEESTE :::::::::::::::::::::::::::::: gi|187 PDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTE 1700 1710 1720 1730 1740 1750 40 50 60 70 80 90 mKIAA4 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS 1760 1770 1780 1790 1800 1810 100 110 120 130 140 150 mKIAA4 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS 1820 1830 1840 1850 1860 1870 160 170 180 190 200 210 mKIAA4 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST 1880 1890 1900 1910 1920 1930 220 230 240 mKIAA4 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK :::::::::::::::::::::::::::::::::: gi|187 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK 1940 1950 1960 1970 >>gi|123232657|emb|CAM23211.1| sodium channel voltage-ga (1973 aa) initn: 1578 init1: 1578 opt: 1578 Z-score: 1818.0 bits: 346.8 E(): 1.5e-92 Smith-Waterman score: 1578; 100.000% identity (100.000% similar) in 244 aa overlap (1-244:1730-1973) 10 20 30 mKIAA4 YIIISFLVVVNMYIAVILENFSVATEESTE :::::::::::::::::::::::::::::: gi|123 PDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTE 1700 1710 1720 1730 1740 1750 40 50 60 70 80 90 mKIAA4 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS 1760 1770 1780 1790 1800 1810 100 110 120 130 140 150 mKIAA4 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS 1820 1830 1840 1850 1860 1870 160 170 180 190 200 210 mKIAA4 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST 1880 1890 1900 1910 1920 1930 220 230 240 mKIAA4 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK :::::::::::::::::::::::::::::::::: gi|123 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK 1940 1950 1960 1970 >>gi|125630309|ref|NP_061340.2| sodium channel, voltage- (1975 aa) initn: 1578 init1: 1578 opt: 1578 Z-score: 1818.0 bits: 346.8 E(): 1.5e-92 Smith-Waterman score: 1578; 100.000% identity (100.000% similar) in 244 aa overlap (1-244:1732-1975) 10 20 30 mKIAA4 YIIISFLVVVNMYIAVILENFSVATEESTE :::::::::::::::::::::::::::::: gi|125 PDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTE 1710 1720 1730 1740 1750 1760 40 50 60 70 80 90 mKIAA4 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|125 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS 1770 1780 1790 1800 1810 1820 100 110 120 130 140 150 mKIAA4 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|125 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS 1830 1840 1850 1860 1870 1880 160 170 180 190 200 210 mKIAA4 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|125 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST 1890 1900 1910 1920 1930 1940 220 230 240 mKIAA4 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK :::::::::::::::::::::::::::::::::: gi|125 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK 1950 1960 1970 >>gi|219521476|gb|AAI72147.1| Unknown (protein for MGC:1 (1984 aa) initn: 1578 init1: 1578 opt: 1578 Z-score: 1818.0 bits: 346.8 E(): 1.5e-92 Smith-Waterman score: 1578; 100.000% identity (100.000% similar) in 244 aa overlap (1-244:1741-1984) 10 20 30 mKIAA4 YIIISFLVVVNMYIAVILENFSVATEESTE :::::::::::::::::::::::::::::: gi|219 PDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTE 1720 1730 1740 1750 1760 1770 40 50 60 70 80 90 mKIAA4 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS 1780 1790 1800 1810 1820 1830 100 110 120 130 140 150 mKIAA4 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS 1840 1850 1860 1870 1880 1890 160 170 180 190 200 210 mKIAA4 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST 1900 1910 1920 1930 1940 1950 220 230 240 mKIAA4 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK :::::::::::::::::::::::::::::::::: gi|219 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK 1960 1970 1980 >>gi|122066139|sp|Q62205.2|SCN9A_MOUSE RecName: Full=Sod (1984 aa) initn: 1578 init1: 1578 opt: 1578 Z-score: 1818.0 bits: 346.8 E(): 1.5e-92 Smith-Waterman score: 1578; 100.000% identity (100.000% similar) in 244 aa overlap (1-244:1741-1984) 10 20 30 mKIAA4 YIIISFLVVVNMYIAVILENFSVATEESTE :::::::::::::::::::::::::::::: gi|122 PDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTE 1720 1730 1740 1750 1760 1770 40 50 60 70 80 90 mKIAA4 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS 1780 1790 1800 1810 1820 1830 100 110 120 130 140 150 mKIAA4 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS 1840 1850 1860 1870 1880 1890 160 170 180 190 200 210 mKIAA4 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST 1900 1910 1920 1930 1940 1950 220 230 240 mKIAA4 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK :::::::::::::::::::::::::::::::::: gi|122 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK 1960 1970 1980 >>gi|55976160|sp|O08562.1|SCN9A_RAT RecName: Full=Sodium (1984 aa) initn: 1550 init1: 1550 opt: 1550 Z-score: 1785.6 bits: 340.9 E(): 9.4e-91 Smith-Waterman score: 1550; 97.951% identity (99.590% similar) in 244 aa overlap (1-244:1741-1984) 10 20 30 mKIAA4 YIIISFLVVVNMYIAVILENFSVATEESTE :::::::::::::::::::::::::::::: gi|559 PDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTE 1720 1730 1740 1750 1760 1770 40 50 60 70 80 90 mKIAA4 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS 1780 1790 1800 1810 1820 1830 100 110 120 130 140 150 mKIAA4 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::.:: gi|559 GDRIHCLDILFAFTKRVLGEGGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEEVS 1840 1850 1860 1870 1880 1890 160 170 180 190 200 210 mKIAA4 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST :::::::::::::::.::::::::::::::::::::::: :::::::::::::::.:::: gi|559 ATIIQRAYRRYRLRQHVKNISSIYIKDGDRDDDLPNKEDTVFDNVNENSSPEKTDVTAST 1900 1910 1920 1930 1940 1950 220 230 240 mKIAA4 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK :::::::::::::::::::::::::::::::::: gi|559 ISPPSYDSVTKPDQEKYETDKTEKEDKEKDESRK 1960 1970 1980 >>gi|149730681|ref|XP_001496473.1| PREDICTED: similar to (1975 aa) initn: 1490 init1: 1490 opt: 1496 Z-score: 1723.2 bits: 329.3 E(): 2.8e-87 Smith-Waterman score: 1496; 94.309% identity (97.561% similar) in 246 aa overlap (1-244:1730-1975) 10 20 30 mKIAA4 YIIISFLVVVNMYIAVILENFSVATEESTE :::::::::::::::::::::::::::::: gi|149 PDCDPRKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTE 1700 1710 1720 1730 1740 1750 40 50 60 70 80 90 mKIAA4 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|149 PLSEDDFEMFYEVWEKFDPDATQFIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS 1760 1770 1780 1790 1800 1810 100 110 120 130 140 150 mKIAA4 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS 1820 1830 1840 1850 1860 1870 160 170 180 190 200 210 mKIAA4 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST ::.:::::::::::::::::::::::::.::::::.:.:.:::::::::: :::::: :: gi|149 ATVIQRAYRRYRLRQNVKNISSIYIKDGERDDDLPSKKDMVFDNVNENSSTEKTDATPST 1880 1890 1900 1910 1920 1930 220 230 240 mKIAA4 ISPPSYDSVTKPDQEKYETDKTEKEDKEKD--ESRK .::::::::::::.:::: ::::::::::: ::.: gi|149 VSPPSYDSVTKPDKEKYEKDKTEKEDKEKDGKESKK 1940 1950 1960 1970 >>gi|74004480|ref|XP_858990.1| PREDICTED: similar to sod (1133 aa) initn: 1315 init1: 1248 opt: 1491 Z-score: 1721.0 bits: 328.1 E(): 3.7e-87 Smith-Waterman score: 1491; 94.309% identity (97.154% similar) in 246 aa overlap (1-244:889-1133) 10 20 30 mKIAA4 YIIISFLVVVNMYIAVILENFSVATEESTE :::::::::::::::::::::::::::::: gi|740 PDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTE 860 870 880 890 900 910 40 50 60 70 80 90 mKIAA4 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS ::::::::::::::::::::::::::. :::::::::::::::::::::::::::::::: gi|740 PLSEDDFEMFYEVWEKFDPDATQFIEYSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS 920 930 940 950 960 970 100 110 120 130 140 150 mKIAA4 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS 980 990 1000 1010 1020 1030 160 170 180 190 200 210 mKIAA4 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST ::.::::::::::::::::::::::::::::::::::::.::::. ::::::::::: :: gi|740 ATVIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDMVFDNI-ENSSPEKTDATPST 1040 1050 1060 1070 1080 1090 220 230 240 mKIAA4 ISPPSYDSVTKPDQEKYETDKTEKEDKEKD--ESRK .::::::::::::.:::: :::::::: :: ::.: gi|740 VSPPSYDSVTKPDKEKYEKDKTEKEDKGKDGKESKK 1100 1110 1120 1130 >>gi|74004476|ref|XP_858910.1| PREDICTED: similar to sod (1137 aa) initn: 1315 init1: 1248 opt: 1491 Z-score: 1721.0 bits: 328.1 E(): 3.8e-87 Smith-Waterman score: 1491; 94.309% identity (97.154% similar) in 246 aa overlap (1-244:893-1137) 10 20 30 mKIAA4 YIIISFLVVVNMYIAVILENFSVATEESTE :::::::::::::::::::::::::::::: gi|740 PDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTE 870 880 890 900 910 920 40 50 60 70 80 90 mKIAA4 PLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS ::::::::::::::::::::::::::. :::::::::::::::::::::::::::::::: gi|740 PLSEDDFEMFYEVWEKFDPDATQFIEYSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVS 930 940 950 960 970 980 100 110 120 130 140 150 mKIAA4 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 GDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS 990 1000 1010 1020 1030 1040 160 170 180 190 200 210 mKIAA4 ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATAST ::.::::::::::::::::::::::::::::::::::::.::::. ::::::::::: :: gi|740 ATVIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDMVFDNI-ENSSPEKTDATPST 1050 1060 1070 1080 1090 1100 220 230 240 mKIAA4 ISPPSYDSVTKPDQEKYETDKTEKEDKEKD--ESRK .::::::::::::.:::: :::::::: :: ::.: gi|740 VSPPSYDSVTKPDKEKYEKDKTEKEDKGKDGKESKK 1110 1120 1130 244 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Wed Mar 18 01:18:46 2009 done: Wed Mar 18 01:23:52 2009 Total Scan time: 721.030 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]