FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0908.ptfa, 501 aa
 vs ./tmplib.26680 library

1768516 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.1894+/-0.00391; mu= 16.6538+/- 0.262
 mean_var=70.3186+/-16.062, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1529

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0601  ( 879 res)   mbh00670                   ( 879)  126   37  0.0051


>>mKIAA0601  ( 879 res)   mbh00670                        (879 aa)
 initn:  66 init1:  43 opt: 126  Z-score: 146.5  bits: 37.4 E(): 0.0051
Smith-Waterman score: 126;  30.000% identity (30.769% ungapped) in 80 aa overlap (12-91:287-364)

                                  10        20        30        40 
mKIAA0                    AAALVGSLFWLGLLLCGLGSLASAEPRAPPNRIAIVGAGIG
                                     ::.  :. .  .  :    ... :.:.:..
mKIAA0 TFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPIKKTGKVIIIGSGVS
        260       270       280       290       300       310      

              50        60        70        80        90       100 
mKIAA0 GTSSAYYLRKKFGKDVKIDVFEREEVGGRLATLKVQGHDYEAGGSVIHPLNLHMKRFVKE
       : ..:  : ..:: :: . .  :..::::.::..  ..  . :. :.  :.         
mKIAA0 GLAAARQL-QSFGMDVTL-LEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSK
        320        330        340       350       360       370    

             110       120       130       140       150       160 
mKIAA0 LGLSSVPASGGLVGVYNGKSLVFEESSWFVINVIKLVWRYGFQSLRMHMWVEDLLDKFMR
                                                                   
mKIAA0 QVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVS
          380       390       400       410       420       430    




501 residues in 1 query   sequences
1768516 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:31:43 2006 done: Mon Mar 27 10:31:44 2006
 Scan time:  0.710 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]