FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0481.ptfa, 690 aa vs ./tmplib.26680 library 1768327 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.9381+/-0.00667; mu= 4.5895+/- 0.444 mean_var=247.4693+/-58.371, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.0815 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0779 ( 662 res) mbg15321 ( 662) 1958 243 5.6e-65 >>mKIAA0779 ( 662 res) mbg15321 (662 aa) initn: 1992 init1: 854 opt: 1958 Z-score: 1259.0 bits: 243.3 E(): 5.6e-65 Smith-Waterman score: 2136; 54.790% identity (59.416% ungapped) in 668 aa overlap (41-689:26-660) 20 30 40 50 60 mKIAA0 LLPGADLRHGEASSANSAGGPTSDAGAAVAPNPGPRSKPPDLKKI----QQLSEGS---- :.:: .:. . .. :.::. . mKIAA0 NFLSLQISLLSLLMEPSGSEQLYEDPDPGGKSQDAEARRQTESEQKLSKMTHNAL 10 20 30 40 50 70 80 90 100 110 mKIAA0 ----MFGHGLKHLF-HSRRRSREREHQASQEAQQQQQQQGLSDQDSPDEKERSPEMHRVS ..:.:::::: :.:::: :...: . . . :..:.. : . mKIAA0 ENINVIGQGLKHLFQHQRRRSSVSPHDVQQIQTDPEPEVDLDSQNACAEID--------- 60 70 80 90 100 120 130 140 150 160 170 mKIAA0 YAVSLHDLPARPTAFNRVLQQIRSRPSIKRGASLHSSGGSGGRRAKSSSLEPQRGSPHLL .:: : :::.:::::::: :..:::.:::: ::.:: : .:::.. mKIAA0 -GVSTH-----PTALNRVLQQIRVPPKMKRGTSLHS------RRGKS---EAPKGSPQIN 110 120 130 140 150 180 190 200 210 220 230 mKIAA0 RKAPQDSSLAAILHQHQGRPRSSSTTD---TALLLADGSSAYLLAEEAESIGDKGDKGDL ::. :. .::.... :::::::::: .. .. . .: . . :. ... .. .. mKIAA0 RKSGQE--VAAVIQS--GRPRSSSTTDAPTSSSVMEIACAAGVCVPGEEATAERIERLEV 160 170 180 190 200 240 250 260 270 280 290 mKIAA0 VALSLPSGPGHGDSDGPISLDVPDGAPDPQRTKAAIEHLHQKILKITEQIKIEQEARDDN .:. :. ...:: : . :: :::::::::: ::.:::::.:::::: : ::::: mKIAA0 SSLAQTSSAVASSTDGSIHTESVDGIPDPQRTKAAIAHLQQKILKLTEQIKIAQTARDDN 210 220 230 240 250 260 300 310 320 330 340 350 mKIAA0 VAEYLKLANNADKQQVSRIKQVFEKKNQKSAQTIAQLHKKLEHYRRRLKEIEQNGPSRQP :::::::::.:::::..::::::::::::::::: ::.::::::.:.:.:.:::: ::: mKIAA0 VAEYLKLANSADKQQAARIKQVFEKKNQKSAQTILQLQKKLEHYHRKLREVEQNGIPRQP 270 280 290 300 310 320 360 370 380 390 400 410 mKIAA0 KDVLRDMQQGLKDVGANMRAGISGFGGGVVEGVKGSLSGLSQATHTA---VVSKPREFAS :::.:::.::::::::. ..::. :::..:::..:..:::::.: :::::::.:: mKIAA0 KDVFRDMHQGLKDVGAK----VTGFSEGVVDSVKGGFSSFSQATHSAAGAVVSKPREIAS 330 340 350 360 370 380 420 430 440 450 460 470 mKIAA0 LIRNKFGSADNIAHLKDPMEDGPPEEAARALSGSATLVSSPKYGSDDECSSASASSAGAG :::::::::::: .::: .:.: .....::. ... :::::::...::::...:.::. mKIAA0 LIRNKFGSADNIPNLKDSLEEGQVDDGGKALGVISNFQSSPKYGSEEDCSSATSGSVGAN 390 400 410 420 430 440 480 490 500 510 520 530 mKIAA0 SNSGAGPGGALGSPRSNTLYGAPGNLDTLLEELREIKEGQSHLEDSMEDLKTQLQRDYTY :..:. :: .: ..::: ...:.::.:..::.: :..::::.: :: . ::::. mKIAA0 STTGGIAVGA-SSSKTNTLDMQSSGFDALLHEVQEIRETQARLEDSFETLKEHYQRDYSL 450 460 470 480 490 500 540 550 560 570 580 590 mKIAA0 MTQCLQEERYRYERLEEQLNDLTELHQNEMTNLKQELASMEEKVAYQSYERARDIQEAVE . : ::::::: :::::::::::::::::. ::::::::::::.::::::::::::::.: mKIAA0 IMQTLQEERYRCERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALE 510 520 530 540 550 560 600 610 620 630 640 650 mKIAA0 SCLTRVTKLELQQQQQQVVQLEGVENANARALLGKFINVILALMAVLLVFVSTIANFITP .: ::..:.::::::::::::::.:::.:: ::::.::..::.::::::::::.:: ..: mKIAA0 ACQTRISKMELQQQQQQVVQLEGLENATARNLLGKLINILLAVMAVLLVFVSTVANCVVP 570 580 590 600 610 620 660 670 680 690 mKIAA0 LMKTRLRITSTALLLLVLFLLWKHWASLTYLLEHVLLPS ::::: : :: .:. . .::::: .: ..... : mKIAA0 LMKTRNRTFSTLFLVAFIAFLWKHWDALFSYVDRLFSPPR 630 640 650 660 690 residues in 1 query sequences 1768327 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:21:50 2006 done: Mon Mar 27 10:21:51 2006 Scan time: 0.830 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]