FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00116.ptfa, 289 aa
 vs ./tmplib.26680 library

1768728 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.3110+/-0.00509; mu= 7.0560+/- 0.339
 mean_var=126.5290+/-29.584, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1140

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1662  ( 616 res)   mfk00026                   ( 616)  152   35  0.0082


>>mKIAA1662  ( 616 res)   mfk00026                        (616 aa)
 initn: 102 init1:  71 opt: 152  Z-score: 142.8  bits: 35.4 E(): 0.0082
Smith-Waterman score: 152;  28.042% identity (30.460% ungapped) in 189 aa overlap (103-288:227-403)

             80        90       100       110       120       130  
mFLJ00 GHLSVAETEMLRDPESGQQLLQALEGENIRLEAALEWRRRELVFWQWMDTVLDTCSPETP
                                     ::  :  : .:    .:.... :  .::::
mKIAA1 VELSPLAPSSPQRMRTLSRSTPERPTKQEDLERDLAQRSEERR--KWFEST-DGRTPETP
        200       210       220       230         240        250   

            140        150        160        170       180         
mFLJ00 AVTSQPTVLPA-ISEGGLGEL-ESVKQELQALQE-ELREVSEPRRAAWEARVGGLGQGPE
       .  ..   : : ...   ..: : .... : :..  ::: ..   .:   .. .  .:: 
mKIAA1 SGDGSRRGLGAPLTDDQQSRLSEEIEKKWQELEKLPLRENKRVPLTALLNQAHNDRRGPT
           260       270       280       290       300       310   

     190       200       210       220       230       240         
mFLJ00 WSNSRKALQEAVQQELAALQGSWEQSSTPGQPQRPHRLVRSKDGAPRPQGLQAAEVIRTL
        :.:..::.. ::.  : :. .:.  .    ::   :: ...   :   . .: :  :.:
mKIAA1 -SDSHEALEKEVQSLRAQLE-AWRLRGEA--PQNAPRLQEDSHIPPGYISQEACE--RSL
            320       330        340         350       360         

     250       260       270       280                             
mFLJ00 SAKEACLKKALHQLQRQCQQELARLAGALPGLIWILPPEH                    
       .  :.  .....::::. ..:: ::        :.:  :                     
mKIAA1 AEMESSHQQVMEQLQRHHERELQRLQQEKE---WLLAEETAATASAIEAMKKAYQEELSR
       370       380       390          400       410       420    

mKIAA1 ELSKTRSLQQGPESLRKQHQLDMEALKQELQVLSERYSQKCLEIGALTRQAEEREHTLRR
          430       440       450       460       470       480    




289 residues in 1 query   sequences
1768728 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:07:02 2006 done: Mon Mar 27 10:07:03 2006
 Scan time:  0.520 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]