FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0976.ptfa, 470 aa vs ./tmplib.26680 library 1768547 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.8795+/-0.00452; mu= 20.5753+/- 0.304 mean_var=95.5308+/-22.181, 0's: 0 Z-trim: 11 B-trim: 11 in 1/35 Lambda= 0.1312 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1857 ( 101 res) mbg20504 ( 101) 247 56 1.6e-09 mKIAA0533 ( 1702 res) mpf00729 (1702) 185 46 2.3e-05 mKIAA0818 ( 600 res) mbg02936 ( 600) 147 38 0.002 mKIAA0815 ( 835 res) mpm01062 ( 835) 146 38 0.0027 >>mKIAA1857 ( 101 res) mbg20504 (101 aa) initn: 238 init1: 238 opt: 247 Z-score: 263.3 bits: 55.8 E(): 1.6e-09 Smith-Waterman score: 247; 52.632% identity (52.632% ungapped) in 57 aa overlap (57-113:33-89) 30 40 50 60 70 80 mKIAA0 IAKILEMYLSRFLSIHALWVTVSSVMQPYLFVWGHYDVCKSLIYTEEGKVWDYTACQPES .: : ::.::: . :.:: .:.. ::::. mKIAA1 HHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQPKV 10 20 30 40 50 60 90 100 110 120 130 140 mKIAA0 TDMTKYLKVKLDPPDITCGDPPESFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHP . :.:::..: :::::::: ::. mKIAA1 MRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH 70 80 90 100 >>mKIAA0533 ( 1702 res) mpf00729 (1702 aa) initn: 86 init1: 59 opt: 185 Z-score: 188.7 bits: 46.1 E(): 2.3e-05 Smith-Waterman score: 185; 26.613% identity (28.696% ungapped) in 124 aa overlap (329-448:107-225) 300 310 320 330 340 350 mKIAA0 LRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATSCLYDNSKLTCECEHNTTGPDC :.:. :. :: .: . :.::: : .: mKIAA0 PANYRGDSCQECAPGYYRDTKGLFLGRCVPCQCHGHSDRCL-PGSGICVGCQHNTEGDQC 80 90 100 110 120 130 360 370 380 390 400 410 mKIAA0 GKCKKNY----QGRPWSPGSYLPIPKGTANTCIPSISSIGTNVCDNELLHCQNGGTCQNN .:. .. . : :: : : .. .. . . . .. :: : . ::. mKIAA0 ERCRPGFVSSDPSNPASPCVSCPCPLAVPSNNFADGCVLRNGRCDRCLEGYFGFEQCQGC 140 150 160 170 180 190 420 430 440 450 460 470 mKIAA0 VRCACPDAYTGILCEKLRCEEAGSCGSESGQGAPPRGSPALLLLTMLLGTAGPLVF ::: : : :. ..:.: . : .: mKIAA0 RPCACGPAAKGSECHP----QSGQCHCQPGTTGPQCLECAPGYWGLPEKGCRRCQCPRGH 200 210 220 230 240 250 mKIAA0 CDPHTGHCTCPPGLSGERCDTCSQQHQVPVPGKPGGHGIHCEVCDHCVVLLLDDLERAGA 260 270 280 290 300 310 >>mKIAA0818 ( 600 res) mbg02936 (600 aa) initn: 181 init1: 110 opt: 147 Z-score: 154.0 bits: 38.2 E(): 0.002 Smith-Waterman score: 154; 24.823% identity (29.412% ungapped) in 141 aa overlap (317-448:240-367) 290 300 310 320 330 340 mKIAA0 DFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATSCLYDNSKLT :: . . :.:. :.. . ::. . mKIAA0 LDVKRCNQTTGQCDCHVGYQGLHCDTCKEGFYLNHTVGLCLPCHCSPHGAVSILCNSSGN 210 220 230 240 250 260 350 360 370 380 390 400 mKIAA0 CECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIP-KGTANTCIPSISSIGTNVCDNELLHC :.:. ..:: : ::. .. : .. . :: .. ...: .. :..: :.: mKIAA0 CQCKVGVTGSMCDKCQDGHYG--FGKTGCLPCQCNNRSDSC-----DVHTGAC----LNC 270 280 290 300 310 410 420 430 440 450 mKIAA0 QNGGTCQNNVRC-----ACPDAYTGILCEKLRCEEA---GSCGSESGQGAPPRGSPALLL :... .. .: ::: :.. : . :.: :::. : mKIAA0 QENSKGEHCEECKEGFYPSPDAAKQ--CHRCPCSAVTSTGNCTIESGELEPTCDQCKDGY 320 330 340 350 360 370 460 470 mKIAA0 LTMLLGTAGPLVF mKIAA0 TGQNCNKCENGYYNSDSICTQCECHGHVDPIKTPKICKPESGECINCLHNTTGFWCEKCL 380 390 400 410 420 430 >>mKIAA0815 ( 835 res) mpm01062 (835 aa) initn: 213 init1: 73 opt: 146 Z-score: 151.6 bits: 38.2 E(): 0.0027 Smith-Waterman score: 161; 30.400% identity (36.190% ungapped) in 125 aa overlap (329-451:527-633) 300 310 320 330 340 350 mKIAA0 LRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATSCLYDNSKLTCECEHNTTGPDC ::: :.. .: : . .: : . : :: mKIAA0 GACVCAAGYHGTDCQQRCPSGRYGPGCEQICKC-LNGGTC--DPATGACYCPAGFLGADC 500 510 520 530 540 550 360 370 380 390 400 410 mKIAA0 G-KCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGTNVCDNELLHCQNGGTCQNNVRC . : ::: ..:. : . .: : .: :: .: ..:: :. . mKIAA0 SLACP---QGR-FGPSCAHVCTCGQGAACDP-VS--GTCICPPG----KTGGHCERG--- 560 570 580 590 420 430 440 450 460 470 mKIAA0 ACPDAYTGILCE-KLRCEEAGSCGSESGQGAPPRGSPALLLLTMLLGTAGPLVF ::. : :: : :...: : . .:. . : : mKIAA0 -CPQDRFGKGCEHKCACRNGGLCHATNGSCSCPLGWMGPHCEHACPAGRYGAACLLECSC 600 610 620 630 640 650 mKIAA0 QNNGSCEPTSGACLCGPGFYGQACEDTCPAGFHGSGCQRVCECQQGAPCDPVSGRCLCPA 660 670 680 690 700 710 470 residues in 1 query sequences 1768547 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:33:06 2006 done: Mon Mar 27 10:33:07 2006 Scan time: 0.640 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]