FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1680.ptfa, 582 aa
 vs ./tmplib.26680 library

1768435 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.2391+/-0.00456; mu= 9.4778+/- 0.305
 mean_var=130.5074+/-31.160, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1123

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1128  ( 672 res)   mpj00694                   ( 672)  173   39  0.0012


>>mKIAA1128  ( 672 res)   mpj00694                        (672 aa)
 initn: 282 init1: 141 opt: 173  Z-score: 157.6  bits: 39.3 E(): 0.0012
Smith-Waterman score: 263;  32.171% identity (36.404% ungapped) in 258 aa overlap (128-369:429-672)

       100       110       120       130       140       150       
mKIAA1 PVSDSRVIPSSGDHVFNKTSYGYEASAAKVLASSLSPYREGRYIERRLRSSSEGTAGSSR
                                     : :  . :: :  .:    .::.::   ..
mKIAA1 SEQAFGKAEEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDE
      400       410       420       430       440       450        

       160       170        180       190       200       210      
mKIAA1 MVLKPKDGHVEASSLRKHRTGS-SSSKMNSLDVLNHLGSCELDEDDLMLDLEFLEEQNLQ
         :.:  : :       : .::  ::.:::.:.::.: ::.:..::::::... :.  :.
mKIAA1 EGLEPI-GSV-------HPVGSYESSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLE
      460               470       480       490       500       510

        220           230       240           250        260       
mKIAA1 PPVC----REDSCHSVMSCTAVLLSPVDP----GKEVNMLEEP-KCPEPSKQNLSLRITK
          :    : :     .  .   .    :    :..   : .: .  . ....::     
mKIAA1 NVECDNMNRFDRTDRNVRQSQDGFWKRPPQRWSGQDHYHLSHPGHYHHHGQSDLS---RG
              520       530       540       550       560          

       270       280       290         300        310       320    
mKIAA1 DTDQEARCSHVSCMPNSPSADWPQQGVE--ENGGI-DSLPFRLMLQECTAVKTLLLKMKR
       .  .:.  .:   . ..:  .  .. :.  .:  : : . .: :.:.:::::: :::.::
mKIAA1 SPYRESPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKR
       570       580       590       600       610       620       

          330         340       350       360        370       380 
mKIAA1 VLQESDVSPS--SSTTSLPISPLTEEPLPFKDITRDECSMLRL-QLKDRDELISQLQAEL
       .:.. : : :  .   ::: ::   ::    .: ..:  . .. :::.            
mKIAA1 LLHQHDGSGSLHDVQLSLPSSP---EPEDGDQIYKNEDLLNEITQLKE            
       630       640          650       660       670              

             390       400       410       420       430       440 
mKIAA1 EKVQHLQKAFASRVDKSTQTELLGCDGLSLKRLEAVQGGRETTHRNRTMSQSHSTRDRKA




582 residues in 1 query   sequences
1768435 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:50:51 2006 done: Mon Mar 27 10:50:52 2006
 Scan time:  0.800 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]