FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0613.ptfa, 730 aa
 vs ./tmplib.26680 library

1768287 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 15.8510+/-0.0102; mu= -39.1011+/- 0.668
 mean_var=727.8612+/-179.888, 0's: 0 Z-trim: 12  B-trim: 0 in 0/36
 Lambda= 0.0475

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1071  ( 539 res)   mpm04376                   ( 539)  322   37  0.0049


>>mKIAA1071  ( 539 res)   mpm04376                        (539 aa)
 initn: 471 init1: 222 opt: 322  Z-score: 146.9  bits: 37.3 E(): 0.0049
Smith-Waterman score: 356;  26.097% identity (29.815% ungapped) in 433 aa overlap (84-492:90-492)

            60        70        80        90       100       110   
mKIAA0 TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQN
                                     :: .  .: : .:   . ::.  : :::  
mKIAA1 EERILALEADMTKWEQKYLEENVMRHFALDAAATVAAQRDTTVISHSPNTSYDTALEA--
      60        70        80        90       100       110         

           120       130       140       150       160       170   
mKIAA0 KIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKVVANSPANADYQERFNPSVL
       .:..   ..   :. .:: . .      .        : ... ..      :.:      
mKIAA1 RIQKEEEEI---LMANKRCLDMEGRIKTL--------HAQIIEKDAMIKVLQQRSRKEPS
       120          130       140               150       160      

           180            190       200         210       220      
mKIAA0 KDSALSTHKPIEVKGL-----GGKATIIHAQYNT--PISMYSQDAIMDAIAGQAQAQ-GS
       :   ::. .:  .:.:     .:.. . :..  :  ::   ..:    .  :.  .  :.
mKIAA1 KTEQLSSMRP--AKSLMSISNAGSGLLAHSSTLTGAPIMEEKRDD--KSWKGSLGVLLGG
        170         180       190       200         210       220  

         230       240       250       260       270       280     
mKIAA0 DFSGASPLASLPVKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSNLQSRSFRILAQM
       :.  . :. : :     :  ..:. .:  :: :.  .   : . .:..  . .  : : :
mKIAA1 DYR-VEPVPSTPSP---VPPSTPLLSAHSKTGSRDCSTQTERGPESTKTAAVT-PISAPM
             230          240       250       260       270        

         290           300              310       320       330    
mKIAA0 TGTEYMQDP----DEEALRRSSTP-------IEHAPVCTSQATSPLLPASAQSPAAASPI
       .:      :    .  :   ..:        .  ::: .. ...:   :.. ::: :. .
mKIAA1 AGPVAAAAPAAAINATAATNTATAATNTTIMVAAAPVAVAAVAAPAAAAATPSPANAAAL
       280       290       300       310       320       330       

            340       350       360       370       380         390
mKIAA0 AAS--PTLATAAATHAAAASAAGPAASPVENPRPQASAYSPAAAASPAPSAH--TSYSEG
       ::.  :. ...::: ..::.. .:::     :   :..  ::: .::: ...  .. :  
mKIAA1 AAAAAPATSVSAATSVSAANSISPAA-----PVAPAAVVPPAAPVSPAAAVQIPAAASLT
       340       350       360            370       380       390  

              400       410       420       430       440       450
mKIAA0 PAAPAPKPRVVTTASIRPSVYQPVPASSYSPSPGANYSPTPYTPSPAPAYTPSPAPTYTP
       ::. .:   ...::..  ..   . :.. . . . . .:.  .: :.::  :.:: . . 
mKIAA1 PATVSPTA-ATATAAVAAATTAAITAAAAAATTAIQVAPATSAPVPSPASIPAPATAQAS
            400        410       420       430       440       450 

              460       470       480        490       500         
mKIAA0 SPAPTYSPSPAPAYTPSPAPNYTPTPSAAYSGGPSE-SASRPPWVTDDSFSQKFAPGKST
       .:.:: . .:::.  :::.:  ::::. . . ::.. .::  :                 
mKIAA1 APTPTQASTPAPTEPPSPVP--TPTPALVQTEGPANPGASSGPRRLSTPNLMCNPDKPDA
             460       470         480       490       500         

     510       520       530       540       550       560         
mKIAA0 TTVSKQTLPWGAPAYNPTGPQVTPLARGTFQRAERFPASSRTPLCGHCNNVIRGPFLVAM
                                                                   
mKIAA1 PAFHSSTLERKTPIQILGQEPDAEMVEYLI                              
     510       520       530                                       




730 residues in 1 query   sequences
1768287 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:24:22 2006 done: Mon Mar 27 10:24:23 2006
 Scan time:  0.860 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]