FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0693.ptfa, 407 aa vs ./tmplib.26680 library 1768610 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.8940+/-0.00683; mu= 0.9273+/- 0.454 mean_var=281.3609+/-67.934, 0's: 0 Z-trim: 7 B-trim: 0 in 0/36 Lambda= 0.0765 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4121 ( 391 res) mph01062 ( 391) 885 110 2e-25 mKIAA0192 ( 1146 res) msp04171 (1146) 238 40 0.0011 >>mKIAA4121 ( 391 res) mph01062 (391 aa) initn: 1105 init1: 560 opt: 885 Z-score: 549.0 bits: 110.4 E(): 2e-25 Smith-Waterman score: 1501; 56.802% identity (64.324% ungapped) in 419 aa overlap (6-407:5-391) 10 20 30 40 50 60 mKIAA0 VRATTMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILH ::::::. : :::::.: .::::::::.::::::.:::.:::..::.::::::: mKIAA4 LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILH 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 RNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALSQSGSSQGLHPQGSLSDTVSTGLPP :::::::::::::::::::::::::.: .:::..:::: . .. :: . : :: mKIAA4 TNLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPP 60 70 80 90 100 110 130 140 150 160 170 mKIAA0 ASLMQGQIGN---GPNHVSMQQT--AQSTLPTTSMSLSGSGHGTGPGYSHSGPTSQSVPM : ::.:... ::::. :: .: .. ..::.. .:.::. ::.:: :.:::.:. mKIAA4 APHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPV 120 130 140 150 160 170 180 190 200 210 220 mKIAA0 QGQGAIS------NYVSRTNINMQSNPVSMMHQQAATSHYNSAQGGSQHYQGQ-APIAMM :.: ..: :: : :.::: : ::::: ...:: ::.:::::: ::...: mKIAA4 QNQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLM 180 190 200 210 220 230 230 240 250 260 270 280 mKIAA0 GQGGQGGSMMGQRPMAPYRPSQQGSSQQYLGQEEYYSEQYSHS-QGSAEPMSQQYYPDGH :: .::. ::::: : :::: ::: ::: :::.::..::::. :: : :.::::::: mKIAA4 GQVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG- 240 250 260 270 280 290 290 300 310 320 330 340 mKIAA0 GDYAYQQSSYTEQSYDRSFEDPTQHYYEGGNSQYSQQQAGYQQGTAQQQTY--SQQQYPN ::::.::: .:: : :: : .:::::. mKIAA4 ------------------------------NSQYGQQQDAYQ-GPPPQQGYPPQQQQYPG 300 310 320 350 360 370 380 390 400 mKIAA0 QQSYPGQQQGYGPAQGAPS-QYSSYQQGQGQQYGSYRTSQTGP-SAQQQRPYGYEQGQYG ::.::::::.:::.::.:. :: .: ::::::::.:: .: :: . :::::::.::::: mKIAA4 QQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYG 330 340 350 360 370 380 mKIAA0 NYQQ :::: mKIAA4 NYQQ 390 >>mKIAA0192 ( 1146 res) msp04171 (1146 aa) initn: 757 init1: 155 opt: 238 Z-score: 158.2 bits: 39.7 E(): 0.0011 Smith-Waterman score: 279; 27.829% identity (32.155% ungapped) in 327 aa overlap (79-392:835-1130) 50 60 70 80 90 100 mKIAA0 TAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALSQS--GSSQGLHP .::. . :.: :.. . : ..: : mKIAA0 PLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMSTVMGLEPSSYKTSVYRQQQPTVP 810 820 830 840 850 860 110 120 130 140 150 160 mKIAA0 QGSLSDTVSTGLPPASLMQGQIGNGPNHVSMQQTAQSTLPTTS-----MSLSGSGHGTGP ::. . : ::..:.. : .: ... : :.. .: : . ::: mKIAA0 QGQ---RLRQQLQAKIQSQGMLGQSSVH-QMTPSSSYGLQTSQGYTSYVSHVGLQQHTGP 870 880 890 900 910 920 170 180 190 200 210 mKIAA0 GYSHSGPTSQSVPMQGQGAISN--YVSRTNINMQSNPVSMMHQQAAT-SH-YNSAQGGSQ . . :. .: :.:. .: :. : ..:. : ...:::: : .: .:.: :. mKIAA0 AGTMVPPSYSSQPYQSTHPSTNPTLVDPTR-HLQQRPSGYVHQQAPTYGHGLTSTQRFSH 930 940 950 960 970 220 230 240 250 260 270 mKIAA0 HYQGQAPI-AMMGQGGQGGSMMGQRPMAPYRPSQQGSSQQYLGQEEYYSEQYSHSQGSAE . :.:. . : . : . : : . : :: ..:: :.. ..: ...: . . mKIAA0 QTLQQTPMMGTMTPLSAQGVQAGVRSTSIL-PEQQQQQQQQQQQQQQQQQQQQQQQQQQQ 980 990 1000 1010 1020 1030 280 290 300 310 320 330 mKIAA0 PMSQQYYPDGHGDYAYQQSSYTEQSYDRSFEDPTQHYYEGGNSQYSQQQAGYQQGTAQQQ ..:: : : ::... .:. .: .::: :: ::: mKIAA0 QQQQQQY---HIRQQQQQQQMLRQQ-----------------QQQQQQQQQQQQQQQQQQ 1040 1050 1060 1070 340 350 360 370 380 390 mKIAA0 TYSQQQYPNQQSYPGQQQGYGPAQGAPSQYSSYQ-QGQGQQYGSYRTSQTGPSAQQQRPY .::: :.:: :::. .: : :.. ..: :: : . .:. . ::: mKIAA0 QQQQQQQPHQQ----QQQA-APPQPQPQSQPQFQRQGLQQTQQQQQTAALVRQLQQQLSN 1080 1090 1100 1110 1120 1130 400 mKIAA0 GYEQGQYGNYQQ mKIAA0 TQPQPSTNIFGRY 1140 407 residues in 1 query sequences 1768610 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:26:23 2006 done: Mon Mar 27 10:26:24 2006 Scan time: 0.610 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]