FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0693.ptfa, 407 aa
 vs ./tmplib.26680 library

1768610 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.8940+/-0.00683; mu= 0.9273+/- 0.454
 mean_var=281.3609+/-67.934, 0's: 0 Z-trim: 7  B-trim: 0 in 0/36
 Lambda= 0.0765

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4121  ( 391 res)   mph01062                   ( 391)  885  110   2e-25
mKIAA0192  ( 1146 res)   msp04171                  (1146)  238   40  0.0011


>>mKIAA4121  ( 391 res)   mph01062                        (391 aa)
 initn: 1105 init1: 560 opt: 885  Z-score: 549.0  bits: 110.4 E(): 2e-25
Smith-Waterman score: 1501;  56.802% identity (64.324% ungapped) in 419 aa overlap (6-407:5-391)

               10        20        30        40        50        60
mKIAA0 VRATTMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILH
            ::::::. : :::::.:  .::::::::.::::::.:::.:::..::.:::::::
mKIAA4  LGGNMSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILH
                10        20        30        40        50         

               70        80        90       100       110       120
mKIAA0 RNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALSQSGSSQGLHPQGSLSDTVSTGLPP
        :::::::::::::::::::::::::.: .:::..::::     . ..  :: .  : ::
mKIAA4 TNLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPP
      60        70        80        90       100       110         

              130          140         150       160       170     
mKIAA0 ASLMQGQIGN---GPNHVSMQQT--AQSTLPTTSMSLSGSGHGTGPGYSHSGPTSQSVPM
       :  ::.:...   ::::. ::    .: .. ..::.. .:.::.  ::.:: :.:::.:.
mKIAA4 APHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPV
     120       130       140       150       160       170         

         180             190       200       210       220         
mKIAA0 QGQGAIS------NYVSRTNINMQSNPVSMMHQQAATSHYNSAQGGSQHYQGQ-APIAMM
       :.: ..:      ::  : :.::: :   :::::  ...::   ::.:::::: ::...:
mKIAA4 QNQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGLM
     180       190       200       210       220       230         

      230       240       250       260       270        280       
mKIAA0 GQGGQGGSMMGQRPMAPYRPSQQGSSQQYLGQEEYYSEQYSHS-QGSAEPMSQQYYPDGH
       :: .::. ::::: : :::: :::  ::: :::.::..::::. ::  : :.::::::: 
mKIAA4 GQVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-
     240       250       260       270       280       290         

       290       300       310       320       330         340     
mKIAA0 GDYAYQQSSYTEQSYDRSFEDPTQHYYEGGNSQYSQQQAGYQQGTAQQQTY--SQQQYPN
                                     ::::.::: .:: :   :: :  .:::::.
mKIAA4 ------------------------------NSQYGQQQDAYQ-GPPPQQGYPPQQQQYPG
                                    300       310        320       

         350       360        370       380        390       400   
mKIAA0 QQSYPGQQQGYGPAQGAPS-QYSSYQQGQGQQYGSYRTSQTGP-SAQQQRPYGYEQGQYG
       ::.::::::.:::.::.:. :: .: ::::::::.:: .: :: .  :::::::.:::::
mKIAA4 QQGYPGQQQSYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYG
       330       340       350       360       370       380       

           
mKIAA0 NYQQ
       ::::
mKIAA4 NYQQ
       390 

>>mKIAA0192  ( 1146 res)   msp04171                       (1146 aa)
 initn: 757 init1: 155 opt: 238  Z-score: 158.2  bits: 39.7 E(): 0.0011
Smith-Waterman score: 279;  27.829% identity (32.155% ungapped) in 327 aa overlap (79-392:835-1130)

       50        60        70        80        90         100      
mKIAA0 TAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALSQS--GSSQGLHP
                                     .::.  .  :.: :.. . :   ..:   :
mKIAA0 PLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMSTVMGLEPSSYKTSVYRQQQPTVP
          810       820       830       840       850       860    

        110       120       130       140            150       160 
mKIAA0 QGSLSDTVSTGLPPASLMQGQIGNGPNHVSMQQTAQSTLPTTS-----MSLSGSGHGTGP
       ::.    .   :      ::..:..  : .:  ...  : :..     .:  :  . :::
mKIAA0 QGQ---RLRQQLQAKIQSQGMLGQSSVH-QMTPSSSYGLQTSQGYTSYVSHVGLQQHTGP
             870       880        890       900       910       920

             170       180         190       200         210       
mKIAA0 GYSHSGPTSQSVPMQGQGAISN--YVSRTNINMQSNPVSMMHQQAAT-SH-YNSAQGGSQ
       . .   :. .: :.:.    .:   :. :  ..:. : ...:::: : .:  .:.:  :.
mKIAA0 AGTMVPPSYSSQPYQSTHPSTNPTLVDPTR-HLQQRPSGYVHQQAPTYGHGLTSTQRFSH
              930       940       950        960       970         

       220        230       240       250       260       270      
mKIAA0 HYQGQAPI-AMMGQGGQGGSMMGQRPMAPYRPSQQGSSQQYLGQEEYYSEQYSHSQGSAE
       .   :.:. . :   .  : . : :  .   : :: ..::   :..  ..: ...: . .
mKIAA0 QTLQQTPMMGTMTPLSAQGVQAGVRSTSIL-PEQQQQQQQQQQQQQQQQQQQQQQQQQQQ
     980       990      1000       1010      1020      1030        

        280       290       300       310       320       330      
mKIAA0 PMSQQYYPDGHGDYAYQQSSYTEQSYDRSFEDPTQHYYEGGNSQYSQQQAGYQQGTAQQQ
        ..:: :   :     ::... .:.                 .: .:::   ::   :::
mKIAA0 QQQQQQY---HIRQQQQQQQMLRQQ-----------------QQQQQQQQQQQQQQQQQQ
     1040         1050      1060                       1070        

        340       350       360       370        380       390     
mKIAA0 TYSQQQYPNQQSYPGQQQGYGPAQGAPSQYSSYQ-QGQGQQYGSYRTSQTGPSAQQQRPY
         .::: :.::    :::. .: :  :..  ..: ::  :   . .:.    . :::   
mKIAA0 QQQQQQQPHQQ----QQQA-APPQPQPQSQPQFQRQGLQQTQQQQQTAALVRQLQQQLSN
     1080          1090       1100      1110      1120      1130   

         400        
mKIAA0 GYEQGQYGNYQQ 
                    
mKIAA0 TQPQPSTNIFGRY
          1140      




407 residues in 1 query   sequences
1768610 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:26:23 2006 done: Mon Mar 27 10:26:24 2006
 Scan time:  0.610 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]