FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4003.ptfa, 677 aa vs ./tmplib.26680 library 1768340 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.3529+/-0.00423; mu= 11.7536+/- 0.283 mean_var=95.9458+/-22.021, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.1309 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0030 ( 907 res) mph01639 ( 907) 745 152 2.9e-37 >>mKIAA0030 ( 907 res) mph01639 (907 aa) initn: 1045 init1: 586 opt: 745 Z-score: 761.4 bits: 151.7 E(): 2.9e-37 Smith-Waterman score: 1139; 35.714% identity (38.391% ungapped) in 588 aa overlap (22-583:233-805) 10 20 30 40 50 mKIAA4 ILLNLCTCNNLERLILQESHFLNVNCEHIKSFSKNLYRQLISYPQEVIPTF : :: : . . . : : : :.. : mKIAA0 KNFLRTHVDSHGHNVFKERISDMCKENRESLVVNYEDLAAREHVLAYFLPEAPAELLQIF 210 220 230 240 250 260 60 70 80 90 100 mKIAA4 DMAVNEIFFDRYP--DSILEHQIQVRPFNALKTKSMRNLNPEDIDQLITISGMVIRTSQL : :. :. . :: : : .: :.:: . .. .:.: ..::: ::.: . . mKIAA0 DEAALEVVLAMYPKYDRITNH-IHVRISHLPLVEELRSLRQLHLNQLIRTSGVVTSCTGV 270 280 290 300 310 320 110 120 130 140 150 160 mKIAA4 IPEMQEAFFQCQVCAHTTR-VEIDRGRIAEPCSCVHCHTTHSMALIHNRSFFSDKQMIKL .:... . ..:. : . .... ..: :: .:... . . ....... : :.. mKIAA0 LPQLSMVKYNCSKCNFVLGPFCQSQNQEVKPGSCPECQSAGPFEINMEETIYQNYQRIRI 330 340 350 360 370 380 170 180 190 200 210 220 mKIAA4 QESPEDMPAGQTPHT--IVLFAHNDLVDKVQPGDRVNVTGIYRA-VPIRVNPRVSNVKSV :::: . ::. :.. .:.: ::::. .:::....::::. .: ..: : mKIAA0 QESPGKVAAGRLPRSKDAILLA--DLVDSCKPGDEIELTGIYHNNYDGSLN--TANGFPV 390 400 410 420 430 230 240 250 260 270 280 mKIAA4 YKTHIDVIHYRKTDAKRLHGLDEEAEQKLFSEKRVKLLKELSRKPDIYERLASALAPSIY . : : . : : : : : .... ::.. ::. .: :.. ...::::: mKIAA0 FATIILANHVAKKDNKVAVGE--------LTDEDVKMITGLSKDQQIGEKIFASIAPSIY 440 450 460 470 480 290 300 310 320 330 340 mKIAA4 EHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLLQYVYNLVPRGQ :::::.:. : :::: :. . :. : :..::.::::::::.:::.:.:. .. :. mKIAA0 GHEDIKRGLALALFGGEPKNPG--GKHKVRGDINVLLCGDPGTAKSQFLKYIEKVSSRAI 490 500 510 520 530 540 350 360 370 380 390 400 mKIAA4 YTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMNESTRSVLHEVM .:.:.:.:::::::::.. : .:. .:..:::::.: :.: ::::::::.. :. .::.: mKIAA0 FTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQDRTSIHEAM 550 560 570 580 590 600 410 420 430 440 450 460 mKIAA4 EQQTLSIAKAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTLLSRFDLIFLML :::..::.::::. .:.:: .:.:::::: ....:. : ::..: . ..::::.. .. mKIAA0 EQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIISRFDVLCVVR 610 620 630 640 650 660 470 480 490 500 mKIAA4 DPQDEAYDRRLAHHLVS--LYYQSEEQVEE------------------EFLDMAVLKDYI : : . :. ::. .:. . .. .. .: : : . ::: :: mKIAA0 DTVDPVQDEMLARFVVGSHVRHHPSNKKDEGLTNGGTLEPAMPNTYGVEPLPQEVLKKYI 670 680 690 700 710 720 510 520 530 540 550 560 mKIAA4 AYAHSTIMPRLSEEASQALIEAYVNMRKIGSSRGMVSAYPRQLESLIRLAEAHAKVRFSN ::. . :.:.. .. . . : ..:: . . : . :..::.::.:::::.... . mKIAA0 IYAKERVRPKLNQMDQDKVARMYSDLRKESMATGSIPITVRHIESMIRMAEAHARMHLRD 730 740 750 760 770 780 570 580 590 600 610 620 mKIAA4 KVEAIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATSRKRKEELAEALRKLILS : ::. : :. :.. mKIAA0 YVMEDDVNMAIRVMMESFIDTQKFSVMRSMRKTFARYLSFRRDNNDLLLFILKQLVAEQV 790 800 810 820 830 840 677 residues in 1 query sequences 1768340 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:59:00 2006 done: Mon Mar 27 10:59:01 2006 Scan time: 0.820 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]