FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0888.ptfa, 689 aa
 vs ./tmplib.26680 library

1768328 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.4124+/-0.00634; mu= -1.8799+/- 0.420
 mean_var=237.2644+/-58.116, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0833

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0035  ( 703 res)   mpj00603                   ( 703)  205   38   0.004


>>mKIAA0035  ( 703 res)   mpj00603                        (703 aa)
 initn: 113 init1:  53 opt: 205  Z-score: 148.5  bits: 37.9 E(): 0.004
Smith-Waterman score: 239;  22.148% identity (25.385% ungapped) in 447 aa overlap (277-686:73-499)

        250       260       270       280          290             
mKIAA0 TASKQYFEKYPGDHELLWEVEGVGHWHQRVPVTRALQREAIK---ATDVSQYE-------
                                     :::.  ..:. .   . : :. :       
mKIAA0 DANASSLLDIYSFWLNRSTKAPKVKLQSNGPVTKKAKKETSSSDSSEDSSEDEDKKAQGL
             50        60        70        80        90       100  

        300       310       320       330       340       350      
mKIAA0 ATRPVSGEYGLAAVPEHEPGLDDTQSSELQIHSLKDAFASTSEGPEKTPVSTRTRSSHLK
        :. ....   :.::.:  :   ...:: .  : ...     :  .: ::. .. . . :
mKIAA0 PTQKAAAQVKRASVPQHA-GKAAAKASESS--SSEESSEEEEEDKKKKPVQQKAAKPQAK
            110       120        130         140       150         

          360       370       380       390       400           410
mKIAA0 --RPKIGKRFQDSEFSSSQGEDENVAKTSPTASVNKIEYAARTSESSE----EFLEEEPE
         ::  .:. ..:: .:..  : .  . .: ..  :   ::... ..:       . .:.
mKIAA0 AVRPP-AKKAESSESDSDSDSDSSSEEETPQTQKPKAAVAAKAQTKAEAKPGTPAKAQPK
     160        170       180       190       200       210        

                  420       430         440       450       460    
mKIAA0 ----QGVIDFEDESGDKDAQPALETQPRL--QKQDGDKDSALEPVNGEVMDAALKPSLTT
           ... .  . :...... . : .      :.   : ...  .  .:  :  . : ..
mKIAA0 VANGKAAASSSSSSSSSSSDDSEEEKKAAAPPKKTVPKKQVVAKAPVKVAAAPTQKSSSS
      220       230       240       250       260       270        

          470          480       490       500       510       520 
mKIAA0 EDEDSTSE-GLEEDLK--VPPFNSSGEPGNPVPLVAESSKVPEATLAKTSPDTDSEMLID
       :: .:  : : .. .:  . :..:   :. :.:  . ....:. . :.:.:  .:.   :
mKIAA0 EDSSSEEEEGQRQPMKKKAGPYSSVPPPSVPLPKKSPGTQAPKKAAAQTQPADSSD---D
      280       290       300       310       320       330        

             530       540       550       560         570         
mKIAA0 QSPSDDKGHTEENLSPVSKKKTLLGSSDNVATVSNIEKS--DGNFPNSVVPEFPEEPVSQ
       .: ..:..  ::.  :.  : ..  .  ..: :..  .:  :..  .:   : : .::: 
mKIAA0 SSDDSDSSSEEEKKPPA--KTVVSKTPAKAAPVKKKAESSSDSSDSDSSEDEAPAKPVST
         340       350         360       370       380       390   

     580       590       600       610       620       630         
mKIAA0 NLSPNTTSSVEDQGEEGAPEAQEPSATQSSLIEVELEDAPFPQNAGQKSQSEEQSEASSE
       . ::. . . . .. ...   ..:......           ::.    :.: :.  .:::
mKIAA0 TKSPKPAVTPKPSAAKAVTTPKQPAGSNQK-----------PQSRKADSSSSEEESSSSE
           400       410       420                  430       440  

     640         650       660               670       680         
mKIAA0 HLEQFTQSAE--KAVDSSSEEIEVEVPVV--------DRRNLRRKAKGHKGPGKKKAKLT
       . :   .::   ::  ...     ..: .        :  . ... :  : :.::::   
mKIAA0 EEEASKKSATTPKAKVTAKAAPAKQAPQAAGDSSSDSDSSSSEEEEKTPKPPAKKKAAGG
            450       460       470       480       490       500  

mKIAA0 AVSTPAPGKKAEAESSSSSSSSSEDSSEEEKKKKPKATTPKIQASKANGTPASLNGKAAK
            510       520       530       540       550       560  




689 residues in 1 query   sequences
1768328 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:31:14 2006 done: Mon Mar 27 10:31:15 2006
 Scan time:  0.850 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]