FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4077.ptfa, 358 aa
 vs ./tmplib.26680 library

1768659 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.6125+/-0.00474; mu= 16.4562+/- 0.317
 mean_var=115.4056+/-27.233, 0's: 0 Z-trim: 4  B-trim: 25 in 1/35
 Lambda= 0.1194

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0460  ( 1385 res)   mpm03155                  (1385)  263   56 1.1e-08


>>mKIAA0460  ( 1385 res)   mpm03155                       (1385 aa)
 initn: 328 init1: 163 opt: 263  Z-score: 248.4  bits: 56.5 E(): 1.1e-08
Smith-Waterman score: 323;  28.975% identity (31.418% ungapped) in 283 aa overlap (69-349:1-263)

       40        50        60        70        80        90        
mKIAA4 RRERGSGGMSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAK
                                     .: :: : :...::   ::  : . ::.. 
mKIAA0                               IQGLSSWCIENKKHHSTIVYHWMKWLRRST
                                             10        20        30

      100       110       120        130       140       150       
mKIAA4 PNRKLTFLYLANDVIQNSKRKGPE-FTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIW
         ..:...::::::::: :::.   : ..:: :. ::   :.   : : .: . :...::
mKIAA0 YPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVK---DPSVSKSIERIFKIW
               40        50        60        70           80       

       160       170        180       190       200       210      
mKIAA4 EERSVYENDVLEQLKHALYG-DKKARKRTYEQIKVDENENCSSLGSPSEPPQTLDLVRAL
       :.:.:: .:..  :..:: . . ::  ..    :.      . . : .   . :   :. 
mKIAA0 EDRNVYPEDMIVALREALTSTNPKAALKS----KI-----VAEFRSQALIEELLMYKRSE
        90       100       110                120       130        

        220       230       240       250       260       270      
mKIAA4 QDLENAASGDAAVHQRIASLPVEVQEVSLLEKITDKESGERLSKMVEDACMLLADYNGRL
       ...:         ....... :.:  .  :. . :: .:...::  :.:   : .. . :
mKIAA0 DQIELK-------EKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEASSKLEEFVNGL
      140              150       160       170       180       190 

        280       290       300       310       320       330      
mKIAA4 AAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRARIQSLPDLS
         .. .  .::. : .     .    : .   . ::    ::. ..:.:    ..:::  
mKIAA0 DKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLPDPE
             200       210       220       230       240       250 

        340       350                                              
mKIAA4 RLPNVTGSHMHLPFAGDIYSED                                      
       . : : .  :  :                                               
mKIAA0 ESP-VPSPSMDAPSPTGSESPFQGMGGEEPQSPAMESDKSATPEPVTDNRDVEDMELSDV
              260       270       280       290       300       310




358 residues in 1 query   sequences
1768659 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:01:10 2006 done: Mon Mar 27 11:01:11 2006
 Scan time:  0.600 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]