# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj07349.fasta.nr -Q ../query/mKIAA1158.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mKIAA1158, 268 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7916611 sequences
Expectation_n fit: rho(ln(x))= 4.3074+/-0.000184; mu= 12.8163+/- 0.010
mean_var=62.1857+/-12.139, 0's: 40 Z-trim: 49 B-trim: 1598 in 1/64
Lambda= 0.162641
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|148693566|gb|EDL25513.1| sodium channel, voltag ( 230) 1485 356.7 2.1e-96
gi|109109234|ref|XP_001104555.1| PREDICTED: simila ( 294) 1437 345.5 6e-93
gi|37999668|sp|Q8BHK2.1|SCN3B_MOUSE RecName: Full= ( 215) 1427 343.0 2.5e-92
gi|37999353|sp|Q9JK00.1|SCN3B_RAT RecName: Full=So ( 215) 1421 341.6 6.6e-92
gi|15822812|gb|AAL07512.1| brain and heart sodium ( 215) 1419 341.2 9.1e-92
gi|73954986|ref|XP_852775.1| PREDICTED: similar to ( 310) 1404 337.8 1.3e-90
gi|12229762|sp|Q9NY72.1|SCN3B_HUMAN RecName: Full= ( 215) 1397 336.0 3.2e-90
gi|149717017|ref|XP_001503479.1| PREDICTED: simila ( 215) 1389 334.1 1.2e-89
gi|37999703|sp|Q8HXJ7.1|SCN3B_MACFA RecName: Full= ( 215) 1387 333.7 1.7e-89
gi|118597372|sp|Q2KI11.1|SCN3B_BOVIN RecName: Full ( 215) 1382 332.5 3.7e-89
gi|148693570|gb|EDL25517.1| sodium channel, voltag ( 226) 1293 311.6 7.5e-83
gi|126326871|ref|XP_001379971.1| PREDICTED: hypoth ( 385) 1275 307.6 2e-81
gi|224083565|ref|XP_002192666.1| PREDICTED: sodium ( 215) 1096 265.4 5.9e-69
gi|118101900|ref|XP_417884.2| PREDICTED: similar t ( 215) 1094 264.9 8.2e-69
gi|56789688|gb|AAH88017.1| Sodium channel, voltage ( 215) 945 229.9 2.7e-58
gi|50414782|gb|AAH77295.1| Scn3b-prov protein [Xen ( 215) 908 221.3 1.1e-55
gi|47225076|emb|CAF97491.1| unnamed protein produc ( 196) 722 177.6 1.5e-42
gi|94958227|gb|ABF47244.1| voltage-gated sodium ch ( 220) 706 173.9 2.1e-41
gi|1705869|sp|P53788.1|SCN1B_RABIT RecName: Full=S ( 218) 602 149.5 4.7e-34
gi|109124327|ref|XP_001093023.1| PREDICTED: simila ( 218) 599 148.8 7.6e-34
gi|1705868|sp|Q07699.1|SCN1B_HUMAN RecName: Full=S ( 218) 599 148.8 7.6e-34
gi|399255|sp|Q00954.1|SCN1B_RAT RecName: Full=Sodi ( 218) 597 148.3 1.1e-33
gi|75075097|sp|Q4PPC4.1|SCN1B_CANFA RecName: Full= ( 218) 597 148.3 1.1e-33
gi|122142567|sp|Q17QN4.1|SCN1B_BOVIN RecName: Full ( 218) 597 148.3 1.1e-33
gi|148692003|gb|EDL23950.1| sodium channel, voltag ( 298) 597 148.4 1.3e-33
gi|3023492|sp|P97952.1|SCN1B_MOUSE RecName: Full=S ( 218) 592 147.1 2.4e-33
gi|47211069|emb|CAF89684.1| unnamed protein produc ( 217) 573 142.7 5.2e-32
gi|148529717|gb|ABQ82131.1| sodium channel beta 1 ( 222) 566 141.0 1.7e-31
gi|94958215|gb|ABF47239.1| voltage-gated sodium ch ( 221) 550 137.3 2.2e-30
gi|129307122|gb|ABO30513.1| sodium channel beta1 s ( 221) 542 135.4 8.2e-30
gi|40225909|gb|AAH21266.2| SCN1B protein [Homo sap ( 186) 540 134.9 1e-29
gi|94958211|gb|ABF47237.1| voltage-gated sodium ch ( 211) 535 133.7 2.5e-29
gi|148693565|gb|EDL25512.1| sodium channel, voltag ( 77) 526 131.2 5.3e-29
gi|94958209|gb|ABF47236.1| voltage-gated sodium ch ( 209) 502 126.0 5.3e-27
gi|129307125|gb|ABO30514.1| sodium channel beta1 s ( 209) 490 123.2 3.7e-26
gi|157886087|emb|CAP09501.1| novel protein similar ( 220) 479 120.6 2.3e-25
gi|38607338|gb|AAR25552.1| voltage gated sodium ch ( 268) 337 87.4 2.8e-15
gi|6694221|gb|AAF25186.1|AF182949_1 voltage-gated ( 273) 334 86.7 4.7e-15
gi|169146753|emb|CAQ15361.1| novel protein similar ( 134) 327 84.7 8.8e-15
gi|47208096|emb|CAF95229.1| unnamed protein produc ( 215) 313 81.7 1.2e-13
gi|1374955|gb|AAB02428.1| voltage-dependent Na+ ch ( 66) 258 68.2 4e-10
gi|119889117|ref|XP_001256745.1| PREDICTED: simila ( 240) 252 67.4 2.6e-09
gi|127723|sp|P06907.1|MYP0_RAT RecName: Full=Myeli ( 248) 237 63.9 3.1e-08
gi|194036874|ref|XP_001925038.1| PREDICTED: simila ( 298) 236 63.7 4.1e-08
gi|115545486|gb|AAI22660.1| Myelin protein zero [B ( 248) 234 63.2 5e-08
gi|127722|sp|P27573.1|MYP0_MOUSE RecName: Full=Mye ( 248) 233 62.9 5.9e-08
gi|162139829|ref|NP_032649.2| myelin protein zero ( 248) 233 62.9 5.9e-08
gi|109017820|ref|XP_001118030.1| PREDICTED: simila ( 256) 232 62.7 7.1e-08
gi|57111573|ref|XP_545771.1| PREDICTED: similar to ( 258) 232 62.7 7.2e-08
gi|127719|sp|P10522.1|MYP0_BOVIN RecName: Full=Mye ( 219) 231 62.4 7.5e-08
>>gi|148693566|gb|EDL25513.1| sodium channel, voltage-ga (230 aa)
initn: 1485 init1: 1485 opt: 1485 Z-score: 1887.2 bits: 356.7 E(): 2.1e-96
Smith-Waterman score: 1485; 100.000% identity (100.000% similar) in 224 aa overlap (45-268:7-230)
20 30 40 50 60 70
mKIAA1 TRPAGEACPAVEARDSESRWIEVAVPRGGESSRNHLREKMPAFNRLLPLASLVLIYWVRV
::::::::::::::::::::::::::::::
gi|148 QRSSLFSSRNHLREKMPAFNRLLPLASLVLIYWVRV
10 20 30
80 90 100 110 120 130
mKIAA1 CFPVCVEVPSETEAVQGNSMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 CFPVCVEVPSETEAVQGNSMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGH
40 50 60 70 80 90
140 150 160 170 180 190
mKIAA1 QEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 QEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLI
100 110 120 130 140 150
200 210 220 230 240 250
mKIAA1 PLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 PLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAI
160 170 180 190 200 210
260
mKIAA1 PSENKENSVVPVEE
::::::::::::::
gi|148 PSENKENSVVPVEE
220 230
>>gi|109109234|ref|XP_001104555.1| PREDICTED: similar to (294 aa)
initn: 1450 init1: 1412 opt: 1437 Z-score: 1825.0 bits: 345.5 E(): 6e-93
Smith-Waterman score: 1437; 85.227% identity (90.909% similar) in 264 aa overlap (7-268:31-294)
10 20 30
mKIAA1 SGTHSVAQTTAGVGTRPAGEACPAVEARDSE--SRW
: ... :::::: :: . :: . .
gi|109 MEQKPVDDVLGMPRKASSAFAGGCWQPRRAAPAASVVGTRPAEEAVRVDEAGAAGVGGSQ
10 20 30 40 50 60
40 50 60 70 80 90
mKIAA1 IEVAVPRGGESSRNHLREKMPAFNRLLPLASLVLIYWVRVCFPVCVEVPSETEAVQGNSM
: . :::: .. .::::::::.::.:::::::. ::::::::::::::::::: :
gi|109 SECSRSWGGESLGSRQPQKMPAFNRLFPLVSLVLIYWASVCFPVCVEVPSETEAVQGNPM
70 80 90 100 110 120
100 110 120 130 140 150
mKIAA1 KLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 KLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQ
130 140 150 160 170 180
160 170 180 190 200 210
mKIAA1 DVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 DVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIM
190 200 210 220 230 240
220 230 240 250 260
mKIAA1 MYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSVVPVEE
::::::::::::.:::::::::::::::::::::::::::::::::::.:::::
gi|109 MYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE
250 260 270 280 290
>>gi|37999668|sp|Q8BHK2.1|SCN3B_MOUSE RecName: Full=Sodi (215 aa)
initn: 1427 init1: 1427 opt: 1427 Z-score: 1814.0 bits: 343.0 E(): 2.5e-92
Smith-Waterman score: 1427; 100.000% identity (100.000% similar) in 215 aa overlap (54-268:1-215)
30 40 50 60 70 80
mKIAA1 AVEARDSESRWIEVAVPRGGESSRNHLREKMPAFNRLLPLASLVLIYWVRVCFPVCVEVP
::::::::::::::::::::::::::::::
gi|379 MPAFNRLLPLASLVLIYWVRVCFPVCVEVP
10 20 30
90 100 110 120 130 140
mKIAA1 SETEAVQGNSMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|379 SETEAVQGNSMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
40 50 60 70 80 90
150 160 170 180 190 200
mKIAA1 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|379 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
100 110 120 130 140 150
210 220 230 240 250 260
mKIAA1 EDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|379 EDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSV
160 170 180 190 200 210
mKIAA1 VPVEE
:::::
gi|379 VPVEE
>>gi|37999353|sp|Q9JK00.1|SCN3B_RAT RecName: Full=Sodium (215 aa)
initn: 1421 init1: 1421 opt: 1421 Z-score: 1806.4 bits: 341.6 E(): 6.6e-92
Smith-Waterman score: 1421; 99.535% identity (99.535% similar) in 215 aa overlap (54-268:1-215)
30 40 50 60 70 80
mKIAA1 AVEARDSESRWIEVAVPRGGESSRNHLREKMPAFNRLLPLASLVLIYWVRVCFPVCVEVP
::::::::::::::::::::::::::::::
gi|379 MPAFNRLLPLASLVLIYWVRVCFPVCVEVP
10 20 30
90 100 110 120 130 140
mKIAA1 SETEAVQGNSMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
gi|379 SETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
40 50 60 70 80 90
150 160 170 180 190 200
mKIAA1 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|379 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
100 110 120 130 140 150
210 220 230 240 250 260
mKIAA1 EDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|379 EDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSV
160 170 180 190 200 210
mKIAA1 VPVEE
:::::
gi|379 VPVEE
>>gi|15822812|gb|AAL07512.1| brain and heart sodium chan (215 aa)
initn: 1419 init1: 1419 opt: 1419 Z-score: 1803.9 bits: 341.2 E(): 9.1e-92
Smith-Waterman score: 1419; 99.535% identity (99.535% similar) in 215 aa overlap (54-268:1-215)
30 40 50 60 70 80
mKIAA1 AVEARDSESRWIEVAVPRGGESSRNHLREKMPAFNRLLPLASLVLIYWVRVCFPVCVEVP
::::::::::::::::::::::::::::::
gi|158 MPAFNRLLPLASLVLIYWVRVCFPVCVEVP
10 20 30
90 100 110 120 130 140
mKIAA1 SETEAVQGNSMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|158 SETEAVQGNSMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
40 50 60 70 80 90
150 160 170 180 190 200
mKIAA1 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|158 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
100 110 120 130 140 150
210 220 230 240 250 260
mKIAA1 EDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSV
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
gi|158 EDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAXENASDYLAIPSENKENSV
160 170 180 190 200 210
mKIAA1 VPVEE
:::::
gi|158 VPVEE
>>gi|73954986|ref|XP_852775.1| PREDICTED: similar to Sod (310 aa)
initn: 1385 init1: 1385 opt: 1404 Z-score: 1782.8 bits: 337.8 E(): 1.3e-90
Smith-Waterman score: 1404; 85.603% identity (92.218% similar) in 257 aa overlap (15-268:54-310)
10 20 30 40
mKIAA1 SGTHSVAQTTAGVGTRPAGEACPAV--EARDSESRWIEVAVPRG
: :. .: :. .::...:: . : :.
gi|739 APRRGRRGPSGRGARGAGRALSAVLNRIPATGPGDRALPGSGRRARSARSRTPRPARSRA
30 40 50 60 70 80
50 60 70 80 90 100
mKIAA1 GESSRNH-LREKMPAFNRLLPLASLVLIYWVRVCFPVCVEVPSETEAVQGNSMKLRCISC
: :. :.::::::::.::::::::.:: ::::::::::::::::::: ::::::::
gi|739 LISPRKPPARKKMPAFNRLFPLASLVLIFWVNVCFPVCVEVPSETEAVQGNPMKLRCISC
90 100 110 120 130 140
110 120 130 140 150 160
mKIAA1 MKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVL
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
gi|739 MKREEVEATTVVEWFYRPEGGKDFLIYEYRNGQQEVESPFQGRLQWNGSKDLQDVSITVL
150 160 170 180 190 200
170 180 190 200 210 220
mKIAA1 NVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVF
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
gi|739 NVTLNDSGLYTCNVSREFAFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVF
210 220 230 240 250 260
230 240 250 260
mKIAA1 LTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSVVPVEE
:::::.:::::::::::::::::::::::::::::::::.:.:::::
gi|739 LTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKESSAVPVEE
270 280 290 300 310
>>gi|12229762|sp|Q9NY72.1|SCN3B_HUMAN RecName: Full=Sodi (215 aa)
initn: 1397 init1: 1397 opt: 1397 Z-score: 1776.0 bits: 336.0 E(): 3.2e-90
Smith-Waterman score: 1397; 97.674% identity (99.070% similar) in 215 aa overlap (54-268:1-215)
30 40 50 60 70 80
mKIAA1 AVEARDSESRWIEVAVPRGGESSRNHLREKMPAFNRLLPLASLVLIYWVRVCFPVCVEVP
:::::::.::::::::::: ::::::::::
gi|122 MPAFNRLFPLASLVLIYWVSVCFPVCVEVP
10 20 30
90 100 110 120 130 140
mKIAA1 SETEAVQGNSMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
gi|122 SETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
40 50 60 70 80 90
150 160 170 180 190 200
mKIAA1 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|122 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
100 110 120 130 140 150
210 220 230 240 250 260
mKIAA1 EDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSV
:::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::.
gi|122 EDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSA
160 170 180 190 200 210
mKIAA1 VPVEE
:::::
gi|122 VPVEE
>>gi|149717017|ref|XP_001503479.1| PREDICTED: similar to (215 aa)
initn: 1389 init1: 1389 opt: 1389 Z-score: 1765.8 bits: 334.1 E(): 1.2e-89
Smith-Waterman score: 1389; 96.744% identity (99.535% similar) in 215 aa overlap (54-268:1-215)
30 40 50 60 70 80
mKIAA1 AVEARDSESRWIEVAVPRGGESSRNHLREKMPAFNRLLPLASLVLIYWVRVCFPVCVEVP
:::::::.::::::::.:..::::::::::
gi|149 MPAFNRLFPLASLVLIFWAHVCFPVCVEVP
10 20 30
90 100 110 120 130 140
mKIAA1 SETEAVQGNSMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 SETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
40 50 60 70 80 90
150 160 170 180 190 200
mKIAA1 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
100 110 120 130 140 150
210 220 230 240 250 260
mKIAA1 EDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSV
:::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::.
gi|149 EDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSA
160 170 180 190 200 210
mKIAA1 VPVEE
:::::
gi|149 VPVEE
>>gi|37999703|sp|Q8HXJ7.1|SCN3B_MACFA RecName: Full=Sodi (215 aa)
initn: 1387 init1: 1387 opt: 1387 Z-score: 1763.3 bits: 333.7 E(): 1.7e-89
Smith-Waterman score: 1387; 96.744% identity (99.070% similar) in 215 aa overlap (54-268:1-215)
30 40 50 60 70 80
mKIAA1 AVEARDSESRWIEVAVPRGGESSRNHLREKMPAFNRLLPLASLVLIYWVRVCFPVCVEVP
:::::::.::.:::::::. ::::::::::
gi|379 MPAFNRLFPLVSLVLIYWASVCFPVCVEVP
10 20 30
90 100 110 120 130 140
mKIAA1 SETEAVQGNSMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
gi|379 SETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
40 50 60 70 80 90
150 160 170 180 190 200
mKIAA1 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|379 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
100 110 120 130 140 150
210 220 230 240 250 260
mKIAA1 EDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSV
:::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::.
gi|379 EDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSA
160 170 180 190 200 210
mKIAA1 VPVEE
:::::
gi|379 VPVEE
>>gi|118597372|sp|Q2KI11.1|SCN3B_BOVIN RecName: Full=Sod (215 aa)
initn: 1382 init1: 1382 opt: 1382 Z-score: 1756.9 bits: 332.5 E(): 3.7e-89
Smith-Waterman score: 1382; 96.744% identity (98.605% similar) in 215 aa overlap (54-268:1-215)
30 40 50 60 70 80
mKIAA1 AVEARDSESRWIEVAVPRGGESSRNHLREKMPAFNRLLPLASLVLIYWVRVCFPVCVEVP
:::::::.:::::.:: :: ::::::::::
gi|118 MPAFNRLFPLASLLLILWVGVCFPVCVEVP
10 20 30
90 100 110 120 130 140
mKIAA1 SETEAVQGNSMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
gi|118 SETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQG
40 50 60 70 80 90
150 160 170 180 190 200
mKIAA1 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|118 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG
100 110 120 130 140 150
210 220 230 240 250 260
mKIAA1 EDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSV
:::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::.
gi|118 EDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSA
160 170 180 190 200 210
mKIAA1 VPVEE
:::::
gi|118 VPVEE
268 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Thu Mar 12 23:54:11 2009 done: Thu Mar 12 23:59:34 2009
Total Scan time: 755.110 Total Display time: 0.040
Function used was FASTA [version 34.26.5 April 26, 2007]