FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0939.ptfa, 527 aa
 vs ./tmplib.26680 library

1768490 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.4237+/-0.00391; mu= 20.5036+/- 0.262
 mean_var=70.3963+/-15.838, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.1529

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0267  ( 700 res)   mbh01806                   ( 700)  885  205 1.5e-53


>>mKIAA0267  ( 700 res)   mbh01806                        (700 aa)
 initn: 869 init1: 302 opt: 885  Z-score: 1053.6  bits: 205.0 E(): 1.5e-53
Smith-Waterman score: 908;  37.986% identity (42.025% ungapped) in 437 aa overlap (20-422:109-537)

                          10        20        30        40         
mKIAA0            ISQKAPGQLEVCFKEAICIILVHLLIRYRLHFLPESVAVVSLG------
                                     .:: :..:: .: .: .:  :.:.      
mKIAA0 LLTLTILTIWLFKHRRARFLHETGLAMIYGLLVGLVLRYGIH-VPSDVNNVTLSCEVQSS
       80        90       100       110       120        130       

               50                60             70        80       
mKIAA0 ---ILMGAVIKVIEF--------KKLANWKEEEMFR-----PNMFFLLLLPPIIFESGYS
          .:...  :  :.        ..: : ...::.:     :..:: .::::::: .:::
mKIAA0 PTTLLVNVSGKFYEYTLKGEISSHELNNVQDNEMLRKVTFDPEVFFNILLPPIIFYAGYS
       140       150       160       170       180       190       

        90       100       110       120              130       140
mKIAA0 LHKGNFFQNIGSITLFAVFGTAISAFVVGGGIY-------FLGQADVISKLNMTDSFAFG
       :.. .::.:.:::  .: .::::: ::.:. .:         ::  . . . .:: . ::
mKIAA0 LKRRHFFRNLGSILAYAFLGTAISCFVIGSIMYGCVTLMKVTGQ--LAGDFYFTDCLLFG
       200       210       220       230       240         250     

              150       160       170       180           190      
mKIAA0 SLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNTAEGL----TRKHMSD
       ...::.:::...:::. :.::  :  :.::::.:::::.:::...  .       .:  :
mKIAA0 AIVSATDPVTVLAIFHELQVDVELYALLFGESVLNDAVAIVLSSSIVAYQPAGDNSHTFD
         260       270       280       290       300       310     

        200       210       220       230       240       250      
mKIAA0 VSGWQTFSQALGYFLKMFFGSAALGTLTGLISALVLKHIDLRKTPSLEFGMMIIFAYLPY
       :..   : ...: :: .: :: :.:. ::...::: :   ::.   :: :.......  .
mKIAA0 VTAM--F-KSIGIFLGIFSGSFAMGAATGVVTALVTKFTKLREFQLLETGLFFLMSWSTF
           320        330       340       350       360       370  

        260       270       280       290       300       310      
mKIAA0 GLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSI
        :::. ...:..:.:: ::...:::..:::  .:   .: .. . :: :. .:...::..
mKIAA0 LLAEAWGFTGVVAVLFCGITQAHYTYNNLSTESQHRTKQLFELLNFLAENFIFSYMGLTL
            380       390       400       410       420       430  

        320        330       340       350       360       370     
mKIAA0 FSFP-HKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMMFIMWFSGLRGAI
       :.:  : :. .::.  .. ...:::.::.::: :::. :  ::  ... .: :.:::::.
mKIAA0 FTFQNHVFNPTFVVGAFIAIFLGRAANIYPLSLLLNLGRRSKIGSNFQHMMMFAGLRGAM
            440       450       460       470       480       490  

         380       390       400       410       420       430     
mKIAA0 PYALSLHLGLEPMEKRQLIGTTTIVIVLFTILLLGGSTMPLIRLVDIEDARARRRSKKDV
        .::...        ::.. .::..::.::. ..::.:  ..  . :.            
mKIAA0 AFALAIRD--TATYARQMMFSTTLLIVFFTVWVFGGGTTAMLSCLHIRVGVDSDQEHLGV
            500         510       520       530       540       550

         440       450       460       470       480       490     
mKIAA0 NLSKTEKMGNAIESEHLSELTEEEYEAHYIRQQDLKGFMWLDAKYLNPFFTRRLTQEDLH
                                                                   
mKIAA0 PDNERRTTKAESAWLFRMWYNFDHNYLKPLLTHSGPPLTTTLPACCGPIARCLTSPQAYE
              560       570       580       590       600       610




527 residues in 1 query   sequences
1768490 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:32:23 2006 done: Mon Mar 27 10:32:23 2006
 Scan time:  0.730 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]