FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4140.ptfa, 998 aa vs ./tmplib.26680 library 1768019 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 10.5380+/-0.00806; mu= -8.3796+/- 0.536 mean_var=353.2151+/-84.723, 0's: 0 Z-trim: 14 B-trim: 0 in 0/36 Lambda= 0.0682 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4191 ( 931 res) msh25333 ( 931) 387 52 3.2e-07 mKIAA0215 ( 822 res) mpm10302 ( 822) 335 47 1e-05 mKIAA1807 ( 850 res) mpm10336 ( 850) 326 46 1.9e-05 mKIAA0239 ( 842 res) mpf00448 ( 842) 299 44 0.00012 mKIAA0876 ( 1027 res) mpg00855 (1027) 301 44 0.00012 mKIAA0780 ( 1129 res) mic14040 (1129) 294 43 0.00021 mKIAA0677 ( 1080 res) mpm07016 (1080) 271 41 0.00097 >>mKIAA4191 ( 931 res) msh25333 (931 aa) initn: 353 init1: 201 opt: 387 Z-score: 222.0 bits: 52.5 E(): 3.2e-07 Smith-Waterman score: 387; 36.022% identity (39.645% ungapped) in 186 aa overlap (12-189:13-189) 10 20 30 40 50 mKIAA4 DTLPNPEVMKRCELCPHKDGALKRTDNGGWAHVVCALYIPEVQFANVSTMEPIV-LQSV : :::.: ::.:.::. :.::::::.:::: :::. .::: .... mKIAA4 RHCLQSRARPADCVLCPNKGGAFKKTDDDRWGHVVCALWIPEVGFANTVFIEPIDGVRNI 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA4 PHDRYNKTCYICDEQGRESKAATGACMTCNKHGCRQAFHVTCAQFAGLLCEEE------- : :.. :::.: ..: .:::. :.: .: :::::::: ::: . : mKIAA4 PPARWKLTCYLCKQKG------VGACIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTG 70 80 90 100 110 120 130 140 150 160 170 mKIAA4 GNGADNVQYCGYCKYHFSKLKKSKRGSNRSYEQSLSDSSSHSQDKHHEKEKKKYKEKDKH :... .:. .:: : . ..: : . .... . ... . .. : . : mKIAA4 GSATFSVRKTAYCDVH-TPPGCTRRPLNIYGDVEMKNGVCR-KESSVKTVRSTSKVRKKA 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA4 KQKHKKQPEPSPALVPSLTVTTEKTYTSTSNNSISGSLKRLEDTAARFTNANFQEVSAHT :. .: :: :..:.. mKIAA4 KKAKKTLAEPC-AVLPTVCAPYIPPQRLNRIANQVAIQRKKQFVERAHSYWLLKRLSRNG 180 190 200 210 220 230 >>mKIAA0215 ( 822 res) mpm10302 (822 aa) initn: 290 init1: 109 opt: 335 Z-score: 195.1 bits: 47.3 E(): 1e-05 Smith-Waterman score: 335; 36.970% identity (40.397% ungapped) in 165 aa overlap (8-165:250-407) 10 20 30 mKIAA4 DTLPNPEVMKRCELCPHKDGALKRTDNGG-WAHVVCA .. .: :::.: ::.: : .: :::: :: mKIAA0 DKCNVCVHQACYGILKIPEGSWLCRSCVLGIYPQCVLCPKKGGAMKTTRTGTKWAHVSCA 220 230 240 250 260 270 40 50 60 70 80 90 mKIAA4 LYIPEVQFANVSTMEPIV-LQSVPHDRYNKTCYICDEQGRESKAATGACMTCNKHGCRQA :.::::..: :::.. .. .: .:. .: .: : ::::. :. ..: : mKIAA0 LWIPEVSIACPERMEPVTKISHIPPSRWALVCNLC-------KLKTGACIQCSVKSCITA 280 290 300 310 320 330 100 110 120 130 140 150 mKIAA4 FHVTCAQFAGLLCEEEGNGADNVQYCGYCKYHFS---KLKKSKRGSNRSYEQSL--SDSS :::::: :: . . .:.:.. ..: : . :: .. .: ::: :... mKIAA0 FHVTCAFEHGLEMKTILDEGDEVKFKSFCLKHSQNKPKLGDAEYHHHRVAEQSQAKSEKT 340 350 360 370 380 390 160 170 180 190 200 210 mKIAA4 SHSQDKHHEKEKKKYKEKDKHKQKHKKQPEPSPALVPSLTVTTEKTYTSTSNNSISGSLK : .: .: :.. : mKIAA0 SLRAQKLRELEEEFYTLVQVEDVAKEMELSAFTVDFIYNYWKLKRKSNFNKPLIPPKEEE 400 410 420 430 440 450 >>mKIAA1807 ( 850 res) mpm10336 (850 aa) initn: 296 init1: 127 opt: 326 Z-score: 190.1 bits: 46.4 E(): 1.9e-05 Smith-Waterman score: 361; 25.516% identity (30.222% ungapped) in 533 aa overlap (8-482:271-778) 10 20 30 mKIAA4 DTLPNPEVMKRCELCPHKDGALKRTDNGG-WAHVVCA :. .: :::.: ::.: : .: :.:: :: mKIAA1 DKCNICVHQACYGILKVPEGSWLCRTCALGVQPKCLLCPKKGGAMKPTRSGTKWVHVSCA 250 260 270 280 290 300 40 50 60 70 80 90 mKIAA4 LYIPEVQFANVSTMEPIV-LQSVPHDRYNKTCYICDEQGRESKAATGACMTCNKHGCRQA :.::::.... ::::. .. .: .:. .: .:.:. :: . :. ..:: : mKIAA1 LWIPEVSIGSPEKMEPITKVSHIPSSRWALVCSLCNEK-------FGASIQCSVKNCRTA 310 320 330 340 350 100 110 120 130 140 150 mKIAA4 FHVTCAQFAGLLCEEEGNGADNVQYCGYCKYHFSKLKKSKR-GSNRSYEQSLSDSSSHSQ :::::: :: . :.:.. .:: : :. : . : . . :.. .:: .: mKIAA1 FHVTCAFDRGLEMKTILAENDEVKFKSYCPKHSSHRKPEEGLGEGAAQENGAPESSPQSP 360 370 380 390 400 410 160 170 180 190 200 mKIAA4 DKHH---EKEKKKYKEKDKHKQKHKKQPEPSPALV-----------PSLTVTTEKTYTST . . : .... .. . .::: .. . ..: : .: : . mKIAA1 LEPYGSLEPNREEAHRVSVRKQKLQQLEDEFYTFVNLLDVARALRLPEEVVDFLYQYWKL 420 430 440 450 460 470 210 220 230 240 mKIAA4 S-----NNSISGSLKRLEDT-AARFTNANFQEVSAHTSSGKDVSEARG------SEGKGK . :. . : ::. : : .. :.... : .:. ..:. . : : mKIAA1 KRKINFNKPLITPKKDEEDNLAKREQDVLFRRLQLFTHLRQDLERVRNLTYMVTRREKIK 480 490 500 510 520 530 250 260 270 280 290 300 mKIAA4 KSSAHSS----GQRGRKPGAGRNPGTAVSASSPFPQGSFSGTPGSVKSSSGSSVQSPQDF .: . . : . . :. : :: . . : ..: : : .. . .: mKIAA1 RSVCKVQEQIFTQYTKLLEQEKVSGVPSSCSSALENMLFFNSP-----SVGPNAPKIED- 540 550 560 570 580 310 320 330 340 350 mKIAA4 LSFTDSDLRSD---SYTHTQQPSSTKDVHKGESGSQEAAVNSFSSLVGH----PVTSTVI :.. .. .:.. : .: . : .:. .. ::.. . .. .: :. :. ... mKIAA1 LKWHSAFFRKQMGTSLVHPLKKSHKRDAVQNSSGTEGKTSHKQPGLCGRREGLEVSESLL 590 600 610 620 630 640 360 370 380 390 400 410 mKIAA4 SQPKSFD-----NSPGELGSSSLPTAGYKRAQTSGIEEEAVK-EKKRKGNKQSKHGPGRP : :.: .: . .. : : .: . .. . :: . : :. ::: : : : mKIAA1 SLEKTFAEARLLSSAQQKNGVVTPDHGKRRDNR--FHCDLVKGDLKDKSFKQS-HKPLRS 650 660 670 680 690 700 420 430 440 450 460 470 mKIAA4 KGNKNQENVSHLSVSSASPTSSVASAAGSVTSSSLQKSPTLLRNGSLQSLSVG-SSPVGS .... ::. . :. . .:...: .. . . : :::: .. . .::: : mKIAA1 TDTSQR----HLDNTRAATSPGVGQSAPGTRKEIVPKC-----NGSLVKVPITPASPVKS 710 720 730 740 750 480 490 500 510 mKIAA4 ----------EISMQYR-HDGACPTTTFSELLNAIHNGIYNSNDVAVSFPNVVSGSGSST : ..: . ::::: mKIAA1 WGGFRIPKKGERQQQGEAHDGACHQHSDCSHLGVSRAPAKERAKSRLRADSENDGYAPDG 760 770 780 790 800 810 >>mKIAA0239 ( 842 res) mpf00448 (842 aa) initn: 237 init1: 102 opt: 299 Z-score: 175.8 bits: 43.8 E(): 0.00012 Smith-Waterman score: 345; 22.564% identity (26.453% ungapped) in 585 aa overlap (8-532:263-821) 10 20 30 mKIAA4 DTLPNPEVMKRCELCPHKDGALKRTDNGG-WAHVVCA :. .: :::.. :::: : .: :.:: :: mKIAA0 DKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKRGGALKPTRSGTKWVHVSCA 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA4 LYIPEVQFANVSTMEPIV-LQSVPHDRYNKTCYICDEQGRESKAATGACMTCNKHGCRQA :.::::... ::::. .. .: .:. .: .: : ::.:. :. .: : mKIAA0 LWIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKE-------CTGTCIQCSMPSCITA 300 310 320 330 340 100 110 120 130 140 150 mKIAA4 FHVTCAQFAGLLCEEEGNGADNVQYCGYCKYHFSKLKKSKRGSNRSYE-QSLSDSSSHSQ :::::: :: . :.:.. . :. : . .:. :. :.. : . . mKIAA0 FHVTCAFDRGLEMRTILADNDEVKFKSLCQEHSDGGPRSEPTSEPVEPSQAVEDLEKVTL 350 360 370 380 390 400 160 170 180 mKIAA4 DKHHEKEKKK-------------------------YKEKDKHKQKHKKQP--EPSPALVP :.. .. .. :. ... . .:: :. : mKIAA0 RKQRLQQLEENFYELVEPAEVAERLDLAEALVDFIYQYWKLKRRANANQPLLTPKTDEVD 410 420 430 440 450 460 190 200 210 220 230 mKIAA4 SLTVTTE-------KTYTSTSNN-----SISGSLKRLEDTAARFTNANFQEVSAHTSSG- .:. . : .: .. .. . : : : . : ..:: : . mKIAA0 NLAQQEQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRERT--KHTICKLQEQIFHLQMKL 470 480 490 500 510 520 240 250 260 270 280 290 mKIAA4 --KDVS-EARGSEGKGKKSSAHSSGQRGRKPGAGRNPGTAVSASSPFPQGSFSGTPGSVK .:. : : ..::::.... .:..: : .::: . . .. : :: mKIAA0 IEQDLCREPSGRRSKGKKNDSKRKGREGPK------------GSSPEKKEKVKAGPESVL 530 540 550 560 570 300 310 320 330 340 350 mKIAA4 SSSGSSVQSPQDFLSFTDSDLRSDSYTHTQQPSSTKDVHKGESGSQEAAVNSFSSLVGHP .. : :.. : : :.. .: . : .. : ....:. . .. : : . mKIAA0 GQLGLSTSFPIDGTFFNSWLAQSVQITAEDMAMSEWSLNSGHREDPAPGLLSEELLQDEE 580 590 600 610 620 630 360 370 380 390 400 mKIAA4 VTSTVISQPKSFDNSPGEL--GSSSLPTAGYKRAQTSGIEEEAVKEKK-RKGNKQSKHGP . . . .:. ..:.. : . ::. .: ... .:. .:. :. .: mKIAA0 TLLSFMRDPSLRPGDPARKARGRTRLPAKKKPSPLQDGPSARTTPDKQPKKAWAQDGKGT 640 650 660 670 680 690 410 420 430 440 450 460 mKIAA4 -GRPKGNKNQENVSHLSVSSAS---PTSSVASAAGSVTSSSLQKSPTLLRNGSLQ--SLS : : . ... ::: : :. :. .. . ..: :.:. . . ..: . . mKIAA0 QGPPMRKPPRRTSSHLPSSPAAGDCPVPATLESPPPLASEILDKTAPMASDLNVQVPGPT 700 710 720 730 740 750 470 480 490 500 510 mKIAA4 VGSSPVGS-----EISMQYRHDGACPTTTFSELLNAIHNGIYNSNDVAVSFPNVVSGSGS :. .:.: :.... . :: :. ... ... . :.. : . ..: : mKIAA0 VSPKPLGRLRPPREMKVSRKSPGA-----RSDAGTGLPSAVAERPKVSLHFDTEADGYFS 760 770 780 790 800 520 530 540 550 560 570 mKIAA4 STPVSSSHIPQQSSGHLQQVGALSPSAASSVTPAAATTQANTVSGSSLSQAPAHMYGSRL . .:.:.. ..:: mKIAA0 DEEMSDSEVEAEDSGVQRASREAGAEEVVRMGVLAS 810 820 830 840 >>mKIAA0876 ( 1027 res) mpg00855 (1027 aa) initn: 249 init1: 146 opt: 301 Z-score: 175.7 bits: 44.1 E(): 0.00012 Smith-Waterman score: 301; 40.000% identity (41.237% ungapped) in 100 aa overlap (12-111:784-880) 10 20 30 40 mKIAA4 DTLPNPEVMKRCELCPHKDGALKRTDNGGWAHVVCALYIPE : :: . :::.:: . : ::.::. .:: mKIAA0 VHASCYGVRPELAKEGWTCSRCAAHAWTAECCLCNLRGGALQRTTEHRWIHVICAIAVPE 760 770 780 790 800 810 50 60 70 80 90 100 mKIAA4 VQFANVSTMEPIVLQSVPHDRYNKTCYICDEQGRESKAATGACMTCNKHGCRQAFHVTCA :.: :: .:. ....:..:.. : : .. : ..:::. :. . : .:::::: mKIAA0 VRFLNVIERNPVDVSAIPEQRWKLKCIYCR---KRMKRVSGACIQCSYEHCSTSFHVTCA 820 830 840 850 860 870 110 120 130 140 150 160 mKIAA4 QFAGLLCEEEGNGADNVQYCGYCKYHFSKLKKSKRGSNRSYEQSLSDSSSHSQDKHHEKE . ::.: : . mKIAA0 HAAGVLMEPDDWPYVVSITCLKHRASGAGGQLLRTVSLGQIVITKNRNGLYYRCRVIGTT 880 890 900 910 920 930 >>mKIAA0780 ( 1129 res) mic14040 (1129 aa) initn: 301 init1: 203 opt: 294 Z-score: 171.5 bits: 43.4 E(): 0.00021 Smith-Waterman score: 294; 42.000% identity (43.299% ungapped) in 100 aa overlap (12-111:828-924) 10 20 30 40 mKIAA4 DTLPNPEVMKRCELCPHKDGALKRTDNGGWAHVVCALYIPE : :: . ::::.: :. ::::.::. .:: mKIAA0 VHASCYGVPSHEVCDGWLCARCKRNAWTAECCLCNLRGGALKQTKNNQWAHVICAVAVPE 800 810 820 830 840 850 50 60 70 80 90 100 mKIAA4 VQFANVSTMEPIVLQSVPHDRYNKTCYICDEQGRESKAATGACMTCNKHGCRQAFHVTCA :.:.:: : .. .: .: . : .: .. : ..:::. :. : .:::::: mKIAA0 VRFTNVPERTQIDVDRIPLQRLKLKCIFCRHR---VKKVSGACIQCSYGRCPASFHVTCA 860 870 880 890 900 910 110 120 130 140 150 160 mKIAA4 QFAGLLCEEEGNGADNVQYCGYCKYHFSKLKKSKRGSNRSYEQSLSDSSSHSQDKHHEKE . ::.: : . mKIAA0 HAAGVLMEPDDWPYVVNITCFRHRVNSNAKSKTCEKAISVGQTVITKHRNTRYYSCRVID 920 930 940 950 960 970 >>mKIAA0677 ( 1080 res) mpm07016 (1080 aa) initn: 223 init1: 167 opt: 271 Z-score: 159.5 bits: 41.1 E(): 0.00097 Smith-Waterman score: 271; 36.000% identity (37.113% ungapped) in 100 aa overlap (12-111:791-887) 10 20 30 40 mKIAA4 DTLPNPEVMKRCELCPHKDGALKRTDNGGWAHVVCALYIPE : :: . :::.:... :.:: ::. : : mKIAA0 VHASCYGVPPAKASEEWMCSRCSANALEEDCCLCSLRGGALQRANDDRWVHVSCAVAILE 770 780 790 800 810 820 50 60 70 80 90 100 mKIAA4 VQFANVSTMEPIVLQSVPHDRYNKTCYICDEQGRESKAATGACMTCNKHGCRQAFHVTCA ..:.:.. :. ....: :.. : .: . :... : : :. :.. : ::::.:: mKIAA0 ARFVNIAERSPVDVSKIPLPRFKLKCVFCKK--RRKRNA-GCCVQCSHGRCPTAFHVSCA 830 840 850 860 870 110 120 130 140 150 160 mKIAA4 QFAGLLCEEEGNGADNVQYCGYCKYHFSKLKKSKRGSNRSYEQSLSDSSSHSQDKHHEKE : ::.. . . mKIAA0 QAAGVMMQPDDWPFVVFITCFRHKIPNLERAKGALLSITAGQKVISKHKNGRFYQCEVVR 880 890 900 910 920 930 998 residues in 1 query sequences 1768019 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:03:06 2006 done: Mon Mar 27 11:03:07 2006 Scan time: 1.030 Display time: 0.230 Function used was FASTA [version 3.4t11 Apr 17, 2002]