FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1065.ptfa, 658 aa vs ./tmplib.26680 library 1768359 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.6549+/-0.00693; mu= 0.4455+/- 0.457 mean_var=341.3531+/-83.396, 0's: 0 Z-trim: 3 B-trim: 20 in 1/35 Lambda= 0.0694 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0171 ( 475 res) meh00412 ( 475) 530 67 5.4e-12 >>mKIAA0171 ( 475 res) meh00412 (475 aa) initn: 593 init1: 316 opt: 530 Z-score: 307.7 bits: 66.8 E(): 5.4e-12 Smith-Waterman score: 541; 29.099% identity (32.061% ungapped) in 433 aa overlap (30-446:35-443) 10 20 30 40 50 mKIAA1 GTGKFLLKGFTFVTKKIKMTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMT :.: :::: : ::::::..::::::..:: mKIAA0 FMCCSVLMLIFMYLYVCVCTCTCAFSLCSTNVVMNYSEIESKVREATNDDPWGPSGQLMG 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 EIADLTYNVVAFSEIMSMVWKR-LNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENI ::: :. : :.:.:.:.: :.:. ::::.:::.: :: :::..:::::. . ::.: mKIAA0 EIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHI 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 FAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERLKVERVQALKTKERMAQVATG . ...:......:. :::::::.:.: :.:: . .:..::. :: .: :.:.... : mKIAA0 YDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYV----G 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 VGSNQITFGRGSSQ--PNLSTSYSEQEYGKAGGSPASYHGSPEASLCPQHRTGAMLGQSE :.:... : . . :. .....:. . .. : : . . : : . :. . .. mKIAA0 VSSDSVGGFRYNERYDPEPKSKWDEEWDKNKSAFPFSDKLG-ELS----DKIGSTIDDT- 190 200 210 220 230 240 250 260 270 280 290 mKIAA1 ELQPLSQRHPCLPHLGLASHPNGDWAQPCLTCDRAARATSPRVSSELEQARPQTSGEEEL .:. . . : . : :. .: : . . . .: ... mKIAA0 ----ISK---------FRRKDREDSPERCSDSDEEKKARRGRSPKGEFKDEEETVTTKHI 240 250 260 270 280 300 310 320 330 340 350 mKIAA1 QLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKVPKKKEAKACCKPGSHSQQT .. : . .. . :: .. . . . . .. ::. :... mKIAA0 HITQATETTTTRHKRTANPSKTIDLGAAAHYTGDKASPDQNASTHTPQSSAKPSVPSSKS 290 300 310 320 330 340 360 370 380 390 400 mKIAA1 T--LLDLMDALPSSGPVTQKTE--PWSAGASANQTNPW--GGTV---APSN----ITDPW . :.::.:. .:. .. . . ::: .: ..: :: . ::.. :. mKIAA0 SGDLVDLFDGSSQSAATSGNGDFGDWSAFNQA-PSGPVASGGELFGSAPQSAVELISASQ 350 360 370 380 390 400 410 420 430 440 450 460 mKIAA1 PSFGTKPAASVDPWGVPTTASTQSVPKNSDPWAASQQPASNAGKTTDAWGAAKPSSASGS :..: :::: . .:.:.. .:. : . ....: mKIAA0 PALGPPPAASNSADLFDLMGSSQATMTSSQSMNFSLMSTNTVGLGLPMSRSQVSCLFPLG 410 420 430 440 450 460 470 480 490 500 510 520 mKIAA1 FELFSNFNGTVKDDFSEFDNLRTSKKPAESGASVPPQDSRTTSPDLFESQSLTSASSKPS mKIAA0 IGAYTSTRRSNSMMS 470 658 residues in 1 query sequences 1768359 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:35:12 2006 done: Mon Mar 27 10:35:13 2006 Scan time: 0.840 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]