FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4235.ptfa, 394 aa
 vs ./tmplib.26680 library

1768623 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.1786+/-0.00416; mu= 17.7488+/- 0.280
 mean_var=81.3953+/-18.682, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1422

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1963  ( 349 res)   mfj52228                   ( 349)  973  209 4.2e-55


>>mKIAA1963  ( 349 res)   mfj52228                        (349 aa)
 initn: 1010 init1: 365 opt: 973  Z-score: 1081.7  bits: 208.8 E(): 4.2e-55
Smith-Waterman score: 984;  49.701% identity (54.785% ungapped) in 334 aa overlap (73-394:35-349)

             50        60        70        80                 90   
mKIAA4 CQLASAMGNEELWVQPALEMPKRRDILAIVLIVLPWTLLITVW---------HQSSLAPL
                                     .:.::: :.. .           : .  : 
mKIAA1 VPYPEPSPCRGWCPRRWGARTMKSALCSRFFILLPWILIVIIMLDVDPRRPAPQLTSRPY
           10        20        30        40        50        60    

           100          110       120       130       140       150
mKIAA4 LAVHKDE--GSD-PRHEAPPGADPREYCMSDRDIVEVVRTEYVHTPPPWSDTLPTIHVVT
       .. :     ::  : ... :: :  :    .:  ..         : :    ::::...:
mKIAA1 FSPHAVGCGGSRVPLRRSSPGRDAAEKRNESRPQLQ---------PEP---RLPTIYAIT
           70        80        90       100                   110  

              160       170       180       190       200       210
mKIAA4 PTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPR
       ::::::::::::::.:::. .: .:::..:::   :. :.. .:  .::  ::::: :::
mKIAA1 PTYSRPVQKAELTRLANTFRQVAQLHWILVEDRATRSELVSSFLARAGLPNTHLHVPTPR
            120       130       140       150       160       170  

              220       230       240       250       260       270
mKIAA4 NYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSTQPGVVYFADDDNTYSLELFEEMRS
        ::       : .::.: ::: .: :::.   ..:.::::..:::::::::::::.:::.
mKIAA1 RYK------RPWLPRATEQRNAGLAWLRQRHQHQSAQPGVLFFADDDNTYSLELFQEMRT
                  180       190       200       210       220      

              280       290       300       310       320       330
mKIAA4 TRRVSVWPVAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQ
       ::.::::::..::: ::: : :.. :::::: : .   ::::::::::::.:..::.  .
mKIAA1 TRKVSVWPVGLVGGRRYERPLVKN-GKVVGWYTGWREDRPFAIDMAGFAVSLQVILSNPK
        230       240       250        260       270       280     

              340       350       360       370       380       390
mKIAA4 AYFKLRGVKGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDP
       : :: :: . :.:::..:....:...:::::.::::.:::::::::  :.:: :  .   
mKIAA1 AVFKRRGSQPGMQESDFLKQITTVEELEPKASNCTKVLVWHTRTEKVNLANEPKYHLDTV
         290       300       310       320       330       340     

           
mKIAA4 SVEI
       ..:.
mKIAA1 NIEV
           




394 residues in 1 query   sequences
1768623 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:06:02 2006 done: Mon Mar 27 11:06:02 2006
 Scan time:  0.620 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]