FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4002.ptfa, 218 aa
 vs ./tmplib.26680 library

1768799 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.5311+/-0.00442; mu= 13.8317+/- 0.297
 mean_var=89.1383+/-19.783, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1358

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0026  ( 288 res)   mbk00081                   ( 288) 1208  246 1.4e-66


>>mKIAA0026  ( 288 res)   mbk00081                        (288 aa)
 initn: 1208 init1: 1208 opt: 1208  Z-score: 1287.7  bits: 245.8 E(): 1.4e-66
Smith-Waterman score: 1208;  86.473% identity (86.473% ungapped) in 207 aa overlap (12-218:82-288)

                                  10        20        30        40 
mKIAA4                    PVPPLPCIHFVAPGNGDGGSTSETPQPPRKKRARVDPTVEN
                                     ::::::::::::.::::::::::.:::::.
mKIAA0 DPALPGRWGGRSAENPPSGSVRKTRKNKQKAPGNGDGGSTSEVPQPPRKKRARADPTVES
              60        70        80        90       100       110 

              50        60        70        80        90       100 
mKIAA4 EETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN
       ::.: .:.:::::::::::::::.::::.::::::: ::::::::.:::.::: :::.::
mKIAA0 EEAFKSRMEVKVKIPEELKPWLVEDWDLVTRQKQLFQLPAKKNVDAILEEYANCKKSQGN
             120       130       140       150       160       170 

             110       120       130       140       150       160 
mKIAA4 TDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRL
       .:::.:::::::.:::::::::::::::::::::::::::  ::::::::.:::::::::
mKIAA0 VDNKDYAVNEVVGGIKEYFNVMLGTQLLYKFERPQYAEILLAHPDAPMSQIYGAPHLLRL
             180       190       200       210       220       230 

             170       180       190       200       210        
mKIAA4 FVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVAPPEYHRKAV
       ::::::::::::::::::::::.::::::::::::::.::.::::.::  .:::::.
mKIAA0 FVRIGAMLAYTPLDEKSLALLLGYLHDFLKYLAKNSASLFTASDYKVASADYHRKAL
             240       250       260       270       280        




218 residues in 1 query   sequences
1768799 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:58:59 2006 done: Mon Mar 27 10:59:00 2006
 Scan time:  0.430 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]