FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0689.ptfa, 643 aa vs ./tmplib.26680 library 1768374 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 10.9275+/-0.00993; mu= -10.9576+/- 0.661 mean_var=512.2325+/-122.336, 0's: 0 Z-trim: 10 B-trim: 0 in 0/36 Lambda= 0.0567 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4231 ( 1467 res) mfj06028 (1467) 373 46 4e-05 mKIAA1870 ( 857 res) mtj02754 ( 857) 289 38 0.0033 >>mKIAA4231 ( 1467 res) mfj06028 (1467 aa) initn: 105 init1: 105 opt: 373 Z-score: 184.4 bits: 45.6 E(): 4e-05 Smith-Waterman score: 475; 35.167% identity (41.880% ungapped) in 418 aa overlap (217-592:333-725) 190 200 210 220 230 240 mKIAA0 QVVMRIMDPEIALKILHRKIHVTPLIPGKSQPVSGPGPGGPGPSG-PGGPGP----GPAP :: :: :: :: .: ::.:: ::: mKIAA4 PRGAPGERGRPGLPGAAGARGNDGARGSDGQP--GP-PGPPGTAGFPGSPGAKGEVGPAG 310 320 330 340 350 250 260 270 280 290 mKIAA0 GLCPGPNVMLNQQNPPAPQPQHLPRRPVKDIPPLMQTSIQGGIPAPGPIPAAVPG-PG-P . :: : .:.. :.:: . . : :: . : :: :: :..:: :: mKIAA4 S--PGSNGSPGQRGEPGPQGHAGAQGPPG--PPGNNGS-PGGKGEMGP--AGIPGAPGLI 360 370 380 390 400 410 300 310 320 330 340 350 mKIAA0 GSLTPGGAMQPQVGMP-VVGPV--PLERGQMQISDPRPPMPRGPMPSGGIP-PRGLLG-- :. : : . :.: . :: : . : ..: :: : ::: :.: : mKIAA4 GARGPPGPAGTN-GIPGTRGPSGEPGKNGAK--GEPGARGERGEAGSPGIPGPKGEDGKD 420 430 440 450 460 360 370 380 390 400 410 mKIAA0 DAPNDPRGGTLLSVTGEVEPRGYMGPPHQGPPMHHGHDNRGPASHDMRGGPLAADPRMLI .:..: .. : ...:: : :. :: :: :. .:: .. :::: : :: . mKIAA4 GSPGEPGANGLPGAAGERGPSGFRGPA--GPNGIPGE--KGPPGE--RGGPGPAGPRGVA 470 480 490 500 510 520 420 430 440 450 mKIAA0 GEP-R-----GPMIDQRGLP-------MDGRGGRE-SRGMETRPMETEVLEPRGMERRME ::: : :: : ::.: ::. : :.: :: :::. : mKIAA4 GEPGRDGTPGGPGI--RGMPGSPGGPGNDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMG 530 540 550 560 570 580 460 470 480 490 500 mKIAA0 TCAME-TRGMDARGLEMRGPG-PSSRGPM--TG--GIQGP----GPI-NMGAGGPQGPRQ . . . : ... : ::: :. :: .: : ::: :: . : .:: ::. mKIAA4 FPGPKGNDGAPGKNGERGGPGGPGLPGPAGKNGETGPQGPPGPTGPAGDKGDSGPPGPQG 590 600 610 620 630 640 510 520 530 540 550 560 mKIAA0 VPNIAGVGNPGGTMQGAGIQGG-GMQGAGMQGGGMQGAGMQGGGMQGAGMQAGMQGASMQ . .: :.:.: : : : : :: :: .: : .: ::. :: . mKIAA4 LQGIPGTGGPPGENGKPGEPGPKGEVGAPGAPGGKGDSGAPG--ERGPPGTAGIPGA--R 650 660 670 680 690 570 580 590 600 610 620 mKIAA0 GGMQGAGMQGASKQGG--GQP-SSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPE :: : .:.. .: : : .: ::: mKIAA4 GGAGPPGPEGGKGPAGPPGPPGASGSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGVP 700 710 720 730 740 750 >>mKIAA1870 ( 857 res) mtj02754 (857 aa) initn: 154 init1: 75 opt: 289 Z-score: 149.9 bits: 38.4 E(): 0.0033 Smith-Waterman score: 356; 31.106% identity (38.028% ungapped) in 434 aa overlap (212-586:112-525) 190 200 210 220 230 mKIAA0 ALLQAQVVMRIMDPEIALKILHRKIHVTPLIPGKSQP--VSG-PG-PGGPGPSGPGGP-- ::: : : ..: :: ::. ::.:: :: mKIAA1 RVGPRGRPGQPGQQGAAGERGHSGAKGFLGIPGPSGPPGAKGLPGEPGSQGPQGPVGPPG 90 100 110 120 130 140 240 250 260 270 280 mKIAA0 --GP-GPA-----PGLCPGPNVM---LNQQNPPAPQPQHLPR-RP--VKDIPPLMQTSIQ :: :: ::: :: . : :. .::. : : .: : :. ... mKIAA1 EMGPKGPPGAVGEPGL-PGDSGMKGDLGPLGPPGEQGLIGQRGEPGLEGDHGPVGPDGLK 150 160 170 180 190 200 290 300 310 320 mKIAA0 GGIPAPGP-----------IPAAVPGPGPGSLT--PGGAMQP----QVGMPVVGPVPLER : ::: . . .::: ..: :: .: . :. . . .. mKIAA1 GDRGDPGPDGEHGEKGQEGLKGEDGSPGPPGITGVPGREGKPGKQGEKGQRGAKGAKGHQ 210 220 230 240 250 260 330 340 350 360 370 380 mKIAA0 GQM-QISDPRPPMPRG-PMPSGGIPPRGLLGDAPNDPRGGTL--LSVTGEVEPRGYMGPP : . ... : : : : : :.:. :: :: . : :. ...: .: :: mKIAA1 GYLGEMGIPGEPGPPGTPGPKGS---RGTLGPTGAPGRMGAQGEPGLAGYNGHKGITGP- 270 280 290 300 310 390 400 410 420 430 mKIAA0 HQGPPMHHGHDNRGPASHDMRGGPLAADPRMLIGEP--RGPMIDQ--RGLPMD-GRGGRE ::: .:. .: ..: : . : : : :::. :. :: : : : :.: mKIAA1 -LGPPGPKGE--KGDQGED---GKTEGPP----GPPGDRGPVGDRGDRGEPGDPGYPGQE 320 330 340 350 360 440 450 460 470 480 490 mKIAA0 S-RGMETRPMETEVLEPRGMERRMETCAMETRGMDA-RGLEMRGPGPSSRGPMTGGIQG- . .:.. .: . .: : . ..: .. .: .. :::.: : :.:: mKIAA1 GVQGLRGEPGQQG--QPGHPGPRGRPGPKGSKGEEGPKGKPGKA-GPSGRRG-TQGLQGL 370 380 390 400 410 420 500 510 520 530 540 mKIAA0 PGPINM-GAGGPQGPRQVPNIAGV-GNPG--GTMQGAGIQGGGMQGAGMQGG-GMQG-AG ::: .. : ::.: .: : : :: : :: . : . :: .:. :. : : mKIAA1 PGPRGVVGRQGPEGTAGSDGIPGRDGRPGYQGD-QGNDGDPGPVGPAGRRGNPGVAGLPG 430 440 450 460 470 480 550 560 570 580 590 600 mKIAA0 MQGG-GMQGAGMQAGMQGASMQGGMQGA-GMQGASKQGG--GQPSSFSPGQSQVTPQDQE :: :..: . :. : . : .:. :. : . . : :::. mKIAA1 AQGPPGFKGESGLPGQLGPPGKRGTEGGTGLPGNQGEPGSKGQPGDSGEMGFPGVAGLFG 490 500 510 520 530 540 610 620 630 640 mKIAA0 KAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAS mKIAA1 PKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPPGMLGPSGLPGPKGDRGSRGDLGLQGPRG 550 560 570 580 590 600 643 residues in 1 query sequences 1768374 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:26:18 2006 done: Mon Mar 27 10:26:19 2006 Scan time: 0.820 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]