FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1337.ptfa, 1243 aa
 vs ./tmplib.26680 library

1767774 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.1093+/-0.00463; mu= 16.9609+/- 0.309
 mean_var=99.0175+/-23.067, 0's: 0 Z-trim: 1  B-trim: 2 in 1/35
 Lambda= 0.1289

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1742  ( 968 res)   mbg10519                   ( 968)  233   55 9.1e-08


>>mKIAA1742  ( 968 res)   mbg10519                        (968 aa)
 initn: 219 init1: 105 opt: 233  Z-score: 231.8  bits: 54.7 E(): 9.1e-08
Smith-Waterman score: 233;  29.268% identity (30.769% ungapped) in 164 aa overlap (335-494:87-246)

          310       320       330       340       350       360    
mKIAA1 EVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQ
                                     :.:..:... ..  : .:: :::::.: . 
mKIAA1 RLLKYYLAEDTMYPLIALVVIFFGMSLYLRSLFITFMSLLGVLGSLMVAYFLYHVAFRMA
         60        70        80        90       100       110      

          370       380       390       400           410       420
mKIAA1 YLGILNGVAAFVIVGIGVDDVFVFINTYRQATHLEDPQLRMIH----TIQTAGKATFFTS
       :. ..: .: ... :. :. ...:.. .: .   . :.  : :    :..  :   . ..
mKIAA1 YFPFVNLAALLLLSGVCVNYTLIFLDMWRLSRG-QVPSGGMPHRVGRTMHHFGYLLLVSG
        120       130       140        150       160       170     

              430       440       450       460       470       480
mKIAA1 LTTAAAYAANVFSQIPAVHDFGLFMSLIVTCCWLAVLFTMPAALGLWSLYMAPLESSCQN
       :::.::. .. .:..:::. :.:::.  :      .:. .::.. :   :.:    .:  
mKIAA1 LTTSAAFYGSYLSRLPAVRCFALFMGTAVLVHMGLTLLWLPATVVLHERYLA---HGCVA
         180       190       200       210       220          230  

              490       500       510       520       530       540
mKIAA1 SCHQKCGRKSSLHFPGDLFTAPERAGGGPAQGPLPYLDDDIPLLNVEDEPASLELGDVSL
       . : . : .. :..                                              
mKIAA1 QAHGQRGGSDPLRLLLALHRRIRIFRKIISILSRLLFQRLLPCGVIKFRYIWICWFAALA
            240       250       260       270       280       290  




1243 residues in 1 query   sequences
1767774 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:41:32 2006 done: Mon Mar 27 10:41:33 2006
 Scan time:  1.140 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]