FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0573.ptfa, 436 aa
 vs ./tmplib.26680 library

1768581 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.2741+/-0.00479; mu= 7.6517+/- 0.321
 mean_var=109.6182+/-25.131, 0's: 0 Z-trim: 2  B-trim: 2 in 1/35
 Lambda= 0.1225

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1830  ( 477 res)   mpm12107                   ( 477)  172   41 0.00025


>>mKIAA1830  ( 477 res)   mpm12107                        (477 aa)
 initn: 132 init1:  92 opt: 172  Z-score: 170.0  bits: 40.7 E(): 0.00025
Smith-Waterman score: 172;  19.572% identity (20.984% ungapped) in 327 aa overlap (67-384:53-366)

         40        50        60        70           80        90   
mKIAA0 LSLADLRCSLLLLVTSIFTPITAEIASLDSENIDEILNNA---DVALVNFYADWCRFSQM
                                     :...: ...    :. ::.::: ::   . 
mKIAA1 ANAVGRRSWAALRLCAAVILLDLAVCKGFVEDLNESFKDNRKDDIWLVDFYAPWCGHCKK
             30        40        50        60        70        80  

           100       110       120       130       140       150   
mKIAA0 LHPIFEEASDVIKEEYPDKNQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREY
       :.::..:..  .:      . :  ...:  ..:.::... .  :::.::... . ..  :
mKIAA1 LEPIWNEVGLEMKSI---GSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGDLAYN--Y
             90          100       110       120       130         

           160       170       180       190       200       210   
mKIAA0 RGQRSVKALADYIRQQKSNPVHEIQSLDEVTNLDRSKRNIIGYFEQKDSENYRVFERVAS
       :: :.   . .. .. ..  .. . : .   .. . .: .. :.  ..  . . .. .::
mKIAA1 RGPRTKDDIIEFAHRVSGALIRPLPSQQMFDHVRKRHRVFFVYIGGESPLKEKYID-AAS
       140       150       160       170       180       190       

           220       230           240       250       260         
mKIAA0 ILHDDCAFLSAFGDLSKPERYNGDNV----IYKPPGRSAPDMVYLGSMTNFDVTYNWIQD
        :     :.::  :.  ::  .  ..    ..:     . :    :..... .. . .:.
mKIAA1 ELIVYTYFFSASEDVV-PEYVTLKEMPAVLVFKDDTYFVYDEYEDGDLSSW-ISRERFQN
        200       210        220       230       240        250    

     270       280       290       300       310       320         
mKIAA0 KCVPLVREITFENGEELTEEGLPFLILFHMKDDTESLEIFQNEVARQLISE-KGTINFLH
         . .   . .: :.     ..  .   . . .   :. . .::::.. .. .  ..: :
mKIAA1 Y-LTMDGFLLYELGDTGKLVAIAVIDEKNTSLEHTRLKSIIQEVARDFRDHFHRDFQFGH
           260       270       280       290       300       310   

      330       340        350       360       370       380       
mKIAA0 ADCDKFRHPLLHIQKT-PADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLH
        : . . . ::  . : :.   ......  ..: . : . .   . . ::. .. .:   
mKIAA1 MDGNDYINTLLMDELTVPT---IVVLNTSNQQYFLLD-RHIKDASDMVQFINSILDGTVP
           320       330          340        350       360         

       390       400       410       420       430                 
mKIAA0 REFHHGPDPTDTAPGEQDQDVASSPPESSFQKLAPSEYRYTLLRDRDEL           
                                                                   
mKIAA1 AQGGDSIFQRLKRIVFDAKSTIVSIFKSSPLMGCFLFGLPLGVISIMCYGIYTADTDGGY
     370       380       390       400       410       420         




436 residues in 1 query   sequences
1768581 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:23:24 2006 done: Mon Mar 27 10:23:25 2006
 Scan time:  0.630 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]