# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj01581.fasta.nr -Q ../query/mKIAA1839.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1839, 462 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7916159 sequences Expectation_n fit: rho(ln(x))= 6.1690+/-0.000196; mu= 6.9716+/- 0.011 mean_var=109.3805+/-20.915, 0's: 39 Z-trim: 54 B-trim: 0 in 0/67 Lambda= 0.122632 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|160419225|sp|Q3UZ01.2|RBM40_MOUSE RecName: Full ( 514) 3069 553.6 4.2e-155 gi|74140935|dbj|BAE22060.1| unnamed protein produc ( 514) 3061 552.2 1.1e-154 gi|74145491|dbj|BAE36180.1| unnamed protein produc ( 513) 3050 550.3 4.3e-154 gi|160419222|sp|Q4G055.2|RBM40_RAT RecName: Full=R ( 515) 2907 525.0 1.8e-146 gi|122144028|sp|Q3MHP0.1|RBM40_BOVIN RecName: Full ( 516) 2776 501.8 1.7e-139 gi|158260711|dbj|BAF82533.1| unnamed protein produ ( 516) 2769 500.5 4e-139 gi|74760946|sp|Q96LT9.1|RBM40_HUMAN RecName: Full= ( 517) 2757 498.4 1.7e-138 gi|194036602|ref|XP_001929365.1| PREDICTED: RNA-bi ( 515) 2755 498.1 2.2e-138 gi|75070522|sp|Q5R6C7.1|RBM40_PONAB RecName: Full= ( 517) 2741 495.6 1.2e-137 gi|73959977|ref|XP_547257.2| PREDICTED: similar to ( 729) 2712 490.6 5.6e-136 gi|71051116|gb|AAH98742.1| LOC686263 protein [Ratt ( 423) 2659 481.0 2.5e-133 gi|224057266|ref|XP_002187421.1| PREDICTED: RNA-bi ( 458) 2102 382.5 1.2e-103 gi|16741598|gb|AAH16603.1| Rnpc3 protein [Mus musc ( 258) 1699 311.0 2.3e-82 gi|89130616|gb|AAI14289.1| RNA-binding region (RNP ( 505) 1701 311.6 3e-82 gi|50949388|emb|CAB70897.2| hypothetical protein [ ( 292) 1684 308.4 1.6e-81 gi|47218419|emb|CAG12690.1| unnamed protein produc ( 609) 1578 289.9 1.2e-75 gi|74213761|dbj|BAB28770.3| unnamed protein produc ( 283) 1544 283.6 4.4e-74 gi|90078134|dbj|BAE88747.1| unnamed protein produc ( 287) 1441 265.4 1.4e-68 gi|166796977|gb|AAI59025.1| Rnpc3 protein [Xenopus ( 520) 1296 239.9 1.1e-60 gi|115530784|emb|CAL49356.1| RNA-binding region (R ( 527) 1296 239.9 1.1e-60 gi|213624585|gb|AAI71301.1| RNA-binding region (RN ( 527) 1294 239.6 1.5e-60 gi|109011644|ref|XP_001108341.1| PREDICTED: simila ( 447) 1143 212.8 1.4e-52 gi|55666002|emb|CAH72168.1| novel protein [Homo sa ( 185) 799 151.6 1.5e-34 gi|224126521|ref|XP_002190841.1| PREDICTED: simila ( 143) 794 150.7 2.3e-34 gi|156549742|ref|XP_001606002.1| PREDICTED: hypoth ( 478) 754 144.0 7.8e-32 gi|210108290|gb|EEA56196.1| hypothetical protein B ( 425) 737 141.0 5.7e-31 gi|7019824|dbj|BAA90885.1| unnamed protein product ( 140) 685 131.4 1.4e-28 gi|156222256|gb|EDO43102.1| predicted protein [Nem ( 476) 687 132.2 2.9e-28 gi|210085405|gb|EEA33874.1| hypothetical protein B ( 480) 634 122.8 1.9e-25 gi|215506859|gb|EEC16353.1| conserved hypothetical ( 440) 574 112.1 2.8e-22 gi|115610644|ref|XP_783188.2| PREDICTED: similar t ( 518) 562 110.1 1.4e-21 gi|198425302|ref|XP_002121929.1| PREDICTED: simila ( 473) 559 109.5 1.9e-21 gi|110762548|ref|XP_623250.2| PREDICTED: similar t ( 403) 537 105.6 2.5e-20 gi|23598415|gb|AAN35177.1| nucleolin-like protein ( 161) 523 102.8 6.8e-20 gi|193683830|ref|XP_001948838.1| PREDICTED: simila ( 436) 507 100.3 1e-18 gi|221114001|ref|XP_002155289.1| PREDICTED: simila ( 449) 495 98.2 4.6e-18 gi|108707928|gb|ABF95723.1| RNA recognition motif ( 467) 487 96.8 1.3e-17 gi|222624851|gb|EEE58983.1| hypothetical protein O ( 560) 488 97.0 1.3e-17 gi|194694084|gb|ACF81126.1| unknown [Zea mays] ( 450) 459 91.8 3.8e-16 gi|190582658|gb|EDV22730.1| hypothetical protein T ( 466) 459 91.8 3.9e-16 gi|223535277|gb|EEF36954.1| RNA binding protein, p ( 450) 426 86.0 2.2e-14 gi|222862278|gb|EEE99784.1| predicted protein [Pop ( 420) 417 84.3 6.2e-14 gi|189235800|ref|XP_001808901.1| PREDICTED: simila ( 424) 405 82.2 2.7e-13 gi|20258828|gb|AAM13896.1| unknown protein [Arabid ( 442) 374 76.8 1.3e-11 gi|222857521|gb|EEE95068.1| predicted protein [Pop ( 346) 370 76.0 1.7e-11 gi|157356156|emb|CAO50069.1| unnamed protein produ ( 277) 367 75.4 2.1e-11 gi|212511339|gb|EEB14343.1| conserved hypothetical ( 332) 358 73.8 7.2e-11 gi|118089340|ref|XP_426256.2| PREDICTED: similar t ( 360) 343 71.2 4.8e-10 gi|149022081|gb|EDL78975.1| rCG26849, isoform CRA_ ( 413) 340 70.7 7.8e-10 gi|109469971|ref|XP_001054058.1| PREDICTED: simila ( 421) 340 70.7 7.9e-10 >>gi|160419225|sp|Q3UZ01.2|RBM40_MOUSE RecName: Full=RNA (514 aa) initn: 3069 init1: 3069 opt: 3069 Z-score: 2941.0 bits: 553.6 E(): 4.2e-155 Smith-Waterman score: 3069; 100.000% identity (100.000% similar) in 462 aa overlap (1-462:53-514) 10 20 30 mKIAA1 QSVRVLSDKGRLKHTAFATFPNEKAAIKAL :::::::::::::::::::::::::::::: gi|160 PRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKAL 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQSVGNKKIEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQSVGNKKIEF 270 280 290 300 310 320 280 290 300 310 320 330 mKIAA1 NISTNMPAAFNKDLETQPNNEEENSDSPDTGLDSNTGFGKIFPKPNLNITEEITEDSDEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 NISTNMPAAFNKDLETQPNNEEENSDSPDTGLDSNTGFGKIFPKPNLNITEEITEDSDEI 330 340 350 360 370 380 340 350 360 370 380 390 mKIAA1 PSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 PSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYV 390 400 410 420 430 440 400 410 420 430 440 450 mKIAA1 DFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 DFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 450 460 470 480 490 500 460 mKIAA1 RPKQDSKEGKRK :::::::::::: gi|160 RPKQDSKEGKRK 510 >>gi|74140935|dbj|BAE22060.1| unnamed protein product [M (514 aa) initn: 3061 init1: 3061 opt: 3061 Z-score: 2933.3 bits: 552.2 E(): 1.1e-154 Smith-Waterman score: 3061; 99.784% identity (99.784% similar) in 462 aa overlap (1-462:53-514) 10 20 30 mKIAA1 QSVRVLSDKGRLKHTAFATFPNEKAAIKAL :::::::::::::::::::::::::::::: gi|741 PRGDRTLLVRHLPAELTAKEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKAL 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQSVGNKKIEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQSVGNKKIEF 270 280 290 300 310 320 280 290 300 310 320 330 mKIAA1 NISTNMPAAFNKDLETQPNNEEENSDSPDTGLDSNTGFGKIFPKPNLNITEEITEDSDEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 NISTNMPAAFNKDLETQPNNEEENSDSPDTGLDSNTGFGKIFPKPNLNITEEITEDSDEI 330 340 350 360 370 380 340 350 360 370 380 390 mKIAA1 PSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYV ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: gi|741 PSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYEKNLARHVQEKDLKFIFGRYV 390 400 410 420 430 440 400 410 420 430 440 450 mKIAA1 DFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 DFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 450 460 470 480 490 500 460 mKIAA1 RPKQDSKEGKRK :::::::::::: gi|741 RPKQDSKEGKRK 510 >>gi|74145491|dbj|BAE36180.1| unnamed protein product [M (513 aa) initn: 2950 init1: 2950 opt: 3050 Z-score: 2922.8 bits: 550.3 E(): 4.3e-154 Smith-Waterman score: 3050; 99.784% identity (99.784% similar) in 462 aa overlap (1-462:53-513) 10 20 30 mKIAA1 QSVRVLSDKGRLKHTAFATFPNEKAAIKAL :::::::::::::::::::::::::::::: gi|741 PRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKAL 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQSVGNKKIEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQSVGNKKIEF 270 280 290 300 310 320 280 290 300 310 320 330 mKIAA1 NISTNMPAAFNKDLETQPNNEEENSDSPDTGLDSNTGFGKIFPKPNLNITEEITEDSDEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 NISTNMPAAFNKDLETQPNNEEENSDSPDTGLDSNTGFGKIFPKPNLNITEEITEDSDEI 330 340 350 360 370 380 340 350 360 370 380 390 mKIAA1 PSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYV 390 400 410 420 430 440 400 410 420 430 440 450 mKIAA1 DFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: gi|741 DFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVV-FARSA 450 460 470 480 490 500 460 mKIAA1 RPKQDSKEGKRK :::::::::::: gi|741 RPKQDSKEGKRK 510 >>gi|160419222|sp|Q4G055.2|RBM40_RAT RecName: Full=RNA-b (515 aa) initn: 1905 init1: 1905 opt: 2907 Z-score: 2786.1 bits: 525.0 E(): 1.8e-146 Smith-Waterman score: 2907; 94.168% identity (98.056% similar) in 463 aa overlap (1-462:53-515) 10 20 30 mKIAA1 QSVRVLSDKGRLKHTAFATFPNEKAAIKAL :::::::::::::::::::::::::::::: gi|160 PRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKAL 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG :::::::::::::::::::::::::: : .::.::::::::::::::::::::.:::::: gi|160 TRLHQLKLLGHTLVVEFAKEQDRVHSSCPASNAEKKKRLDDTVENDKEKKEPDVLTVENG 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME ::::::::::. ::::::::::::::::::::::::::::::::::::::::::::.::: gi|160 TARPPMYEDYVQLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNKLME 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQSVGNKKIEF :::.::::::: :::::::::::::::..:: ::.:::::::::::::::: :::::::: gi|160 LANFQPKRPKTVKPRHVRKKRKIKDMLTVPSPASQSLHPVLLPSDVFDQPQPVGNKKIEF 270 280 290 300 310 320 280 290 300 310 320 mKIAA1 NISTNMPAAFNKDLETQPNNEEENSDSPDTGLD-SNTGFGKIFPKPNLNITEEITEDSDE :::::.:::.::::::. ::::.:::::::::: :::::::.:::::.:::::: ::::: gi|160 NISTNVPAALNKDLETEQNNEEKNSDSPDTGLDDSNTGFGKLFPKPNVNITEEIKEDSDE 330 340 350 360 370 380 330 340 350 360 370 380 mKIAA1 IPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRY .:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 MPSQFISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRY 390 400 410 420 430 440 390 400 410 420 430 440 mKIAA1 VDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 VDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 450 460 470 480 490 500 450 460 mKIAA1 ARPKQDSKEGKRK ::::.:::::::: gi|160 ARPKHDSKEGKRK 510 >>gi|122144028|sp|Q3MHP0.1|RBM40_BOVIN RecName: Full=RNA (516 aa) initn: 1796 init1: 1796 opt: 2776 Z-score: 2660.8 bits: 501.8 E(): 1.7e-139 Smith-Waterman score: 2776; 90.281% identity (95.032% similar) in 463 aa overlap (1-462:53-515) 10 20 30 mKIAA1 QSVRVLSDKGRLKHTAFATFPNEKAAIKAL :::: :::::::::::::::::::.:.::: gi|122 PRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRDLSDKGRLKHTAFATFPNEKTAVKAL 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG :::::::::::::::::::::::::::: . .:::::: :: ::.:::::: : ::.::: gi|122 TRLHQLKLLGHTLVVEFAKEQDRVHSPCPSLGTEKKKRSDDPVEDDKEKKELDCLTIENG 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME :.:::::::::::::::::::::::::::::::::.::::::::::::.::::::..::: gi|122 TTRPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELSSKESEYESSDDEDRQRMTKLME 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQSVGNKKIEF :::::::::: : ::::::::::::::::::::::::::::::::::::: :::::::: gi|122 LANLQPKRPKPIKQRHVRKKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQPVGNKKIEF 270 280 290 300 310 320 280 290 300 310 320 mKIAA1 NISTNMPAAFNKDLETQPNNEEENSDSPDTGLD-SNTGFGKIFPKPNLNITEEITEDSDE .:::.: .::.:::: : : :::::: : : : :: :::::::.::::::::: .:::: gi|122 HISTDMQVAFKKDLEKQQNCEEENSDLPATEADASNIGFGKIFPQPNLNITEEIKDDSDE 330 340 350 360 370 380 330 340 350 360 370 380 mKIAA1 IPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRY .::. :::.::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|122 MPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRY 390 400 410 420 430 440 390 400 410 420 430 440 mKIAA1 VDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|122 VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 450 460 470 480 490 500 450 460 mKIAA1 ARPKQDSKEGKRK ::::::::::::: gi|122 ARPKQDSKEGKRKC 510 >>gi|158260711|dbj|BAF82533.1| unnamed protein product [ (516 aa) initn: 1796 init1: 1796 opt: 2769 Z-score: 2654.1 bits: 500.5 E(): 4e-139 Smith-Waterman score: 2769; 89.849% identity (94.600% similar) in 463 aa overlap (1-462:53-515) 10 20 30 mKIAA1 QSVRVLSDKGRLKHTAFATFPNEKAAIKAL :::::::::::::::::::::::::::::: gi|158 PRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKAL 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG :::::::::::::::::::::::::::: ::..::::: :: ::.:::::: :::::: gi|158 TRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENG 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME :::::::::::::::::::::::::::::::::::.:::.::::::.:.:::::::.::: gi|158 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLME 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQSVGNKKIEF ::::::::::: : :::::::::::::: : :::::::::::::::::: ::::.::: gi|158 LANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSLHPVLLPSDVFDQPQPVGNKRIEF 270 280 290 300 310 320 280 290 300 310 320 mKIAA1 NISTNMPAAFNKDLETQPNNEEENSDSPDTGLD-SNTGFGKIFPKPNLNITEEITEDSDE .:::.:::::.:::: . : ::.: : : : .: :: :::::::::::.::::: ::::: gi|158 HISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDE 330 340 350 360 370 380 330 340 350 360 370 380 mKIAA1 IPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRY .::. :::.::::::::::::::::::::::::::::::::::::.::::::::.::::: gi|158 MPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRY 390 400 410 420 430 440 390 400 410 420 430 440 mKIAA1 VDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|158 VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 450 460 470 480 490 500 450 460 mKIAA1 ARPKQDSKEGKRK :::::: :::::: gi|158 ARPKQDPKEGKRKC 510 >>gi|74760946|sp|Q96LT9.1|RBM40_HUMAN RecName: Full=RNA- (517 aa) initn: 2486 init1: 1513 opt: 2757 Z-score: 2642.6 bits: 498.4 E(): 1.7e-138 Smith-Waterman score: 2757; 89.655% identity (94.397% similar) in 464 aa overlap (1-462:53-516) 10 20 30 mKIAA1 QSVRVLSDKGRLKHTAFATFPNEKAAIKAL :::::::::::::::::::::::::::::: gi|747 PRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKAL 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG :::::::::::::::::::::::::::: ::..::::: :: ::.:::::: :::::: gi|747 TRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENG 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME :::::::::::::::::::::::::::::::::::.:::.::::::.:.:::::::.::: gi|747 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLME 210 220 230 240 250 260 220 230 240 250 260 mKIAA1 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHS-LHPVLLPSDVFDQPQSVGNKKIE ::::::::::: : :::::::::::::: : ::: ::::::::::::::: ::::.:: gi|747 LANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIE 270 280 290 300 310 320 270 280 290 300 310 320 mKIAA1 FNISTNMPAAFNKDLETQPNNEEENSDSPDTGLD-SNTGFGKIFPKPNLNITEEITEDSD :.:::.:::::.:::: . : ::.: : : : .: :: :::::::::::.::::: :::: gi|747 FHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSD 330 340 350 360 370 380 330 340 350 360 370 380 mKIAA1 EIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGR :.::. :::.::::::::::::::::::::::::::::::::::::.::::::::.:::: gi|747 EMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGR 390 400 410 420 430 440 390 400 410 420 430 440 mKIAA1 YVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: gi|747 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 450 460 470 480 490 500 450 460 mKIAA1 SARPKQDSKEGKRK ::::::: :::::: gi|747 SARPKQDPKEGKRKC 510 >>gi|194036602|ref|XP_001929365.1| PREDICTED: RNA-bindin (515 aa) initn: 2097 init1: 2097 opt: 2755 Z-score: 2640.7 bits: 498.1 E(): 2.2e-138 Smith-Waterman score: 2755; 89.655% identity (95.474% similar) in 464 aa overlap (1-462:53-514) 10 20 30 mKIAA1 QSVRVLSDKGRLKHTAFATFPNEKAAIKAL :::::::::::::::::::::::::::::: gi|194 PRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKAL 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG ::::::::::::::::::::::.::::: .:.:::::: :: ::.:::::: : ::.::: gi|194 TRLHQLKLLGHTLVVEFAKEQDQVHSPCPSSSTEKKKRSDDPVEDDKEKKELDCLTIENG 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME :::::::::::::::::::.::::::::::::: .::::::::::::.::::::..::: gi|194 TARPPMYEDYMPLHAPLPPASPQPPEEPPLPDE--ELSSKESEYESSDDEDRQRMTKLME 210 220 230 240 250 260 220 230 240 250 260 mKIAA1 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHS-LHPVLLPSDVFDQPQSVGNKKIE ::::::::::: : ::.::::::::::: ::::::: ::::::::::::::: ::::::: gi|194 LANLQPKRPKTIKQRHARKKRKIKDMLNTPSSASHSSLHPVLLPSDVFDQPQPVGNKKIE 270 280 290 300 310 320 270 280 290 300 310 320 mKIAA1 FNISTNMPAAFNKDLETQPNNEEENSDSPDTGLD-SNTGFGKIFPKPNLNITEEITEDSD :.:::.:::::..::: . :.::.: : : .:.: :: :::::::::::.:.::: :::: gi|194 FHISTDMPAAFKNDLEKEQNSEEQNCDLPASGVDASNKGFGKIFPKPNLSIAEEIKEDSD 330 340 350 360 370 380 330 340 350 360 370 380 mKIAA1 EIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGR :.::. :::.::::::::::::::::::::::::::::::::::::.::::::::::::: gi|194 EMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGR 390 400 410 420 430 440 390 400 410 420 430 440 mKIAA1 YVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: gi|194 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 450 460 470 480 490 500 450 460 mKIAA1 SARPKQDSKEGKRK :::::::::::::: gi|194 SARPKQDSKEGKRKC 510 >>gi|75070522|sp|Q5R6C7.1|RBM40_PONAB RecName: Full=RNA- (517 aa) initn: 2470 init1: 1507 opt: 2741 Z-score: 2627.3 bits: 495.6 E(): 1.2e-137 Smith-Waterman score: 2741; 89.224% identity (94.397% similar) in 464 aa overlap (1-462:53-516) 10 20 30 mKIAA1 QSVRVLSDKGRLKHTAFATFPNEKAAIKAL :::::::::::::::::::::::::::::: gi|750 PRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKAL 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG :::::::::::::::::::::::::::: ::..::::: :: ::.:::::: :::::: gi|750 TRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENG 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME :::::::::::::::::::::::::::::::.:::.:::.::::::.:.:::::::.::: gi|750 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPEEDEELSSEESEYESTDDEDRQRMNKLME 210 220 230 240 250 260 220 230 240 250 260 mKIAA1 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHS-LHPVLLPSDVFDQPQSVGNKKIE ::::::::::: : :::::::::::::: : ::: ::::::::::::::: ::::.:: gi|750 LANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIE 270 280 290 300 310 320 270 280 290 300 310 320 mKIAA1 FNISTNMPAAFNKDLETQPNNEEENSDSPDTGLD-SNTGFGKIFPKPNLNITEEITEDSD :.:::.:::::.:::: . : ::.: : : : .: :: :::::::::::.::::: :::: gi|750 FHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSD 330 340 350 360 370 380 330 340 350 360 370 380 mKIAA1 EIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGR :.::. :::.::::::::::::::::::::::::::::::::::::.::.:::::.:::: gi|750 EMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVEEKDLKYIFGR 390 400 410 420 430 440 390 400 410 420 430 440 mKIAA1 YVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 YVDFSSETRRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 450 460 470 480 490 500 450 460 mKIAA1 SARPKQDSKEGKRK ::::::: :::::: gi|750 SARPKQDPKEGKRKC 510 >>gi|73959977|ref|XP_547257.2| PREDICTED: similar to RNA (729 aa) initn: 2464 init1: 1487 opt: 2712 Z-score: 2597.6 bits: 490.6 E(): 5.6e-136 Smith-Waterman score: 2712; 88.147% identity (94.181% similar) in 464 aa overlap (1-462:265-728) 10 20 30 mKIAA1 QSVRVLSDKGRLKHTAFATFPNEKAAIKAL :::::::::::::::::::::::::::::: gi|739 PRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKAL 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA1 TRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENG :::::::::::::::::::::::::::: :. ::::: :: ::.:::::: .:.::: gi|739 TRLHQLKLLGHTLVVEFAKEQDRVHSPCPPSDPEKKKRSDDPVEDDKEKKELGCITIENG 300 310 320 330 340 350 100 110 120 130 140 150 mKIAA1 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 360 370 380 390 400 410 160 170 180 190 200 210 mKIAA1 TARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLME :::::::::::::::::::.:::::::::::::::.::::::::::::.::::::..::: gi|739 TARPPMYEDYMPLHAPLPPASPQPPEEPPLPDEDEELSSKESEYESSDDEDRQRMTKLME 420 430 440 450 460 470 220 230 240 250 260 mKIAA1 LANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASH-SLHPVLLPSDVFDQPQSVGNKKIE ::::::::::. : .:::::.::::::. :::::: :::::::::::::::: ::::::: gi|739 LANLQPKRPKAIKQHHVRKKQKIKDMLKTPSSASHGSLHPVLLPSDVFDQPQPVGNKKIE 480 490 500 510 520 530 270 280 290 300 310 320 mKIAA1 FNISTNMPAAFNKDLETQPNNEEENSDSPDTGLDS-NTGFGKIFPKPNLNITEEITEDSD :.:::.: .::.:::: . : ::.. : : :. :.::::::::::::::::: :: : gi|739 FHISTDMTSAFKKDLEKEQNCEEQSYDLPAPEGDAPNVGFGKIFPKPNLNITEEIKEDCD 540 550 560 570 580 590 330 340 350 360 370 380 mKIAA1 EIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGR :.::. :::.:::::::::::::::::::::::::::::.::::::.::::::::::::: gi|739 EMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRVYVKNLAKHVQEKDLKFIFGR 600 610 620 630 640 650 390 400 410 420 430 440 mKIAA1 YVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFAR ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: gi|739 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 660 670 680 690 700 710 450 460 mKIAA1 SARPKQDSKEGKRK :::::::::::::: gi|739 SARPKQDSKEGKRKC 720 462 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 01:55:10 2009 done: Mon Mar 16 02:02:03 2009 Total Scan time: 929.530 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]