FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1688.ptfa, 1088 aa
 vs ./tmplib.26680 library

1767929 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.6298+/-0.00726; mu= -5.5674+/- 0.478
 mean_var=305.4613+/-76.172, 0's: 0 Z-trim: 9  B-trim: 2 in 1/35
 Lambda= 0.0734

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0053  ( 549 res)   mtk00386                   ( 549)  306   47 1.2e-05


>>mKIAA0053  ( 549 res)   mtk00386                        (549 aa)
 initn: 245 init1:  94 opt: 306  Z-score: 193.5  bits: 46.6 E(): 1.2e-05
Smith-Waterman score: 306;  32.110% identity (34.653% ungapped) in 218 aa overlap (878-1083:42-255)

       850       860       870       880       890         900     
mKIAA1 AISTYAKYCYHKLQKAALTGAKKGLKKPNVEEIRHAKNAVFSPS--MFGSALQEVMSMQK
                                     : ..  . .. .::  .::. :.:......
mKIAA0 VFEVIPASSDQNRIGQDSYVLMASSQVEMEEWVKFLRRVAGTPSGAVFGQRLDETVAYEQ
              20        30        40        50        60        70 

         910       920       930       940       950       960     
mKIAA1 ERYPDRQLPWVQTRLSEEVLALNGDQTEGIFRVPGDIDEVNALKLQVDQWKVPTGLEDP-
       .  : . .: .  . .: .:  .: . :::::.::. . :. :.   :  . :.  .:  
mKIAA0 KFGP-HLVPILVEKCAEFILE-HGVSEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTD
               80        90        100       110       120         

           970       980       990         1000           1010     
mKIAA1 -HVPASLLKLWYRELEEPLIPHEFYEQ---CIAHYESPEAA-----VAVVHALPRINRMV
        :. ::::::. :.: ::..:   ::    :   ... ::      :  . .::: :  .
mKIAA0 VHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSTLPRDNYNL
     130       140       150       160       170       180         

        1020      1030      1040      1050      1060      1070     
mKIAA1 LCYLIRFLQVFVQPANVAITKMDVSNLAMVMAPNCLRCQSDDPRVIFENTRKEMSFLRVL
       : :. :::.  .:  : :..::.:.::: :.. : .: . .:: ::...: . .  . ..
mKIAA0 LSYICRFLHE-IQ-LNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMM
     190        200        210       220       230       240       

        1080                                                       
mKIAA1 IQHLDTSFMEGVL                                               
       :.  .. :                                                    
mKIAA0 IRDHEVLFPKSKDAPISPPAQKNDAKKAPVPRSSVGWDATEDPPLSRTDSFSNTASSPDA
       250       260       270       280       290       300       




1088 residues in 1 query   sequences
1767929 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:51:00 2006 done: Mon Mar 27 10:51:01 2006
 Scan time:  1.110 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]