FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1750.ptfa, 415 aa vs ./tmplib.26680 library 1768602 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.5324+/-0.00503; mu= 12.5319+/- 0.336 mean_var=125.6137+/-29.251, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1144 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0721 ( 404 res) mfj08144 ( 404) 703 127 2.6e-30 mKIAA4132 ( 147 res) mpj01338 ( 147) 450 84 5.2e-18 >>mKIAA0721 ( 404 res) mfj08144 (404 aa) initn: 687 init1: 502 opt: 703 Z-score: 636.4 bits: 126.7 E(): 2.6e-30 Smith-Waterman score: 724; 38.701% identity (42.210% ungapped) in 385 aa overlap (37-400:19-392) 10 20 30 40 50 60 mKIAA1 SGTMSGRSRGRKSSRAKGRGKGRARARVRAAAEDAWHDEKPPQSPRLGEDSAAAQVQAG- :.:: : : :. . :.. . :: mKIAA0 GVEGNNELSLANTTTPSHASEDL--DLKQDQGLQEETDTVREMEAAGE 10 20 30 40 70 80 90 100 110 120 mKIAA1 -AAQGGAEPAELREEAACRLPLDCGLALRARAADERGLA-APDPDLERARSLAERLTSDT .:.::: : . : : .: . :: ::: ::.:. : ..:. mKIAA0 AGADGGASP----DSEHCGPELCFRVAENSCAAAARGLEDAPSPSKGGDAPSAPVAADDS 50 60 70 80 90 100 130 140 150 160 170 mKIAA1 SFVGTV--G--ALAKLRR----GSR-IGNRRVPGRKAPDTRSATGRGPQATVSGKPKMAS : : : . :: . :. .:....:: : ..: . ....:: :. mKIAA0 SKNGCQLEGPHSPAKPKALEACGAVGLGSQQMPGPKKTKEMTTT-KCAISVATGKEGEAG 110 120 130 140 150 160 180 190 200 210 220 mKIAA1 AGLCAAAPVGEEKKMTEKHAGAGSPAT------VGSMDTLETVQLKLETMNAQADRAYLR :.. . .:::. ::.:. : .. ::.::... .: ..:::::::.:. mKIAA0 AAMQEKKGLQKEKKV----AGGGKEETRPRAPKINCMDSLEAIDQELSNVNAQADRAFLQ 170 180 190 200 210 230 240 250 260 270 280 mKIAA1 LSRKFGQLRLHHLERRNLLIQSIPGFWGQAFQNHPQLSAFLNTKDKEVLSYLNRLEVEEL : ::::..: :..::...::.::::: ::.:::::: ... .:.... :. :::::: mKIAA0 LERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHPQLSPMISGQDEDMMRYMINLEVEEL 220 230 240 250 260 270 290 300 310 320 330 340 mKIAA1 GLARLGYKIKFYFGRNPYFQNKVLIKEYGCGPSGQVVSRSAPIQWLPGHDLQSLSKENPE :.: :.:: : ::::.:. :.::: ::.::: :.::.: :.. :. ..: : mKIAA0 KQPRVGCKFKFIFQSNPYFRNEGLVKEYERRSSGRVVSLSTPIRWHRGQEPQAHIHRNRE 280 290 300 310 320 330 350 360 370 380 390 400 mKIAA1 NNG--SFFGWFSNHSSIESDKIVEIINEDLWPNPLQYYLISE-EARGEKGKEERPGPAKL .: :::.:::.:: .: :.:.:::. .:: :::::::... :: . ..: mKIAA0 GNTIPSFFNWFSDHSLLEFDRIAEIIKGELWSNPLQYYLMGDGPRRGVRVPPRQPVESPR 340 350 360 370 380 390 410 mKIAA1 SPAPAVRQPN mKIAA0 SFRFQSG 400 >>mKIAA4132 ( 147 res) mpj01338 (147 aa) initn: 410 init1: 410 opt: 450 Z-score: 415.7 bits: 84.4 E(): 5.2e-18 Smith-Waterman score: 450; 50.350% identity (51.064% ungapped) in 143 aa overlap (267-409:1-141) 240 250 260 270 280 290 mKIAA1 RLHHLERRNLLIQSIPGFWGQAFQNHPQLSAFLNTKDKEVLSYLNRLEVEELGLARLGYK :.. .: :.: :.. :::.:: . : : mKIAA4 AMIRGRDAEMLRYVTSLEVKELRHPKTGCK 10 20 30 300 310 320 330 340 350 mKIAA1 IKFYFGRNPYFQNKVLIKEYGCGPSGQVVSRSAPIQWLPGHDLQSLSKENPENNGSFFGW .::.: :::::.::...::: ::.::: :.:: : ::. ::. ..: . ::: : mKIAA4 FKFFFRRNPYFRNKLIVKEYEVRSSGRVVSLSTPIIWRRGHEPQSFIRRNQDLICSFFTW 40 50 60 70 80 90 360 370 380 390 400 410 mKIAA1 FSNHSSIESDKIVEIINEDLWPNPLQYYLISEEARGEKGKEERPGPAKLSPAPAVRQPN ::.:: :::.:.:::.:::::::::::: : : . . : :... : : mKIAA4 FSDHSLPESDRIAEIIKEDLWPNPLQYYLCREGIRRPRRRPIRE-PVEI-PRPFGFQSG 100 110 120 130 140 415 residues in 1 query sequences 1768602 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:52:24 2006 done: Mon Mar 27 10:52:25 2006 Scan time: 0.640 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]