FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1923.ptfa, 1022 aa vs ./tmplib.26680 library 1767995 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.2870+/-0.00547; mu= 16.9378+/- 0.366 mean_var=140.9977+/-33.628, 0's: 0 Z-trim: 8 B-trim: 0 in 0/36 Lambda= 0.1080 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1942 ( 431 res) mej02524 ( 431) 272 54 4.2e-08 mKIAA4167 ( 342 res) mpj04828 ( 342) 238 49 1.5e-06 mKIAA0696 ( 555 res) mbh00867 ( 555) 170 39 0.003 mKIAA4123 ( 639 res) mbg05860 ( 639) 165 38 0.0055 >>mKIAA1942 ( 431 res) mej02524 (431 aa) initn: 290 init1: 115 opt: 272 Z-score: 237.8 bits: 54.3 E(): 4.2e-08 Smith-Waterman score: 272; 27.879% identity (29.487% ungapped) in 165 aa overlap (93-249:204-367) 70 80 90 100 110 120 mKIAA1 SGRRFLYIVNLDAPFEGHRKISRQSKWDIGAVQWNPHDSFAHYFAASSNQRVDLYK-WKD :..:.:. .. .... .. : :. . mKIAA1 DPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVP-GRLLTGDCQKNVHLWTPTEG 180 190 200 210 220 230 130 140 150 160 170 mKIAA1 GSGEVGTT-LQGHTRVISDLDWAVFEPDLLVTSSVDTYIYIWDIKDTR-KPTVALSAVA- :: .: . :::: . ::.:. : .... :.:. : ::::. . : . .:.: mKIAA1 GSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAH 240 250 260 270 280 290 180 190 200 210 220 230 mKIAA1 --GASQVKWNKKNANYLATSHDGDVRIWDKR--KPSTAVEYLAAHLSKIHGLDWHPDSEH .. ..:.... :. . :: ...:: : : .. : . :.. . ...:::.. mKIAA1 DGDVNVISWSRREPFLLSGGDDGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHPQDSG 300 310 320 330 340 350 240 250 260 270 280 290 mKIAA1 IFATSSQDNSVKFWDYRQPRKYLNILPCQVPVWKARYTPFSNGLVTVMVPQLRRENSLLL .::.:. ::.. :: mKIAA1 VFAASGADNQITQWDLAVERDPESGETETDPGLAALPQQLLFVHQGETDLKELHWHPQCP 360 370 380 390 400 410 >>mKIAA4167 ( 342 res) mpj04828 (342 aa) initn: 232 init1: 101 opt: 238 Z-score: 210.2 bits: 48.9 E(): 1.5e-06 Smith-Waterman score: 238; 25.725% identity (28.063% ungapped) in 276 aa overlap (77-346:83-341) 50 60 70 80 90 100 mKIAA1 QATAMSVDCLGQHAVLSGRRFLYIVNLDAPFEGH-RKISRQSKWDIGAVQWNPHDSFAHY ..:. .: . .:. : :. .: . mKIAA4 SAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSS--RL 60 70 80 90 100 110 110 120 130 140 150 160 mKIAA1 FAASSNQRVDLYKWKDGSGEVGTTLQGHTRVISDLDWAVFEP--DLLVTSSVDTYIYIWD .::... . . : ::. ::.::. . : :.: .:.:..: : . ::. mKIAA4 VSASDDKTLKV--WDMRSGKCLKTLKGHSDFVFCCD---FNPPSNLIVSGSFDESVKIWE 120 130 140 150 160 170 180 190 200 210 220 mKIAA1 IKDTRKPTVALSAVAGA-SQVKWNKKNANYLATSHDGDVRIWDKRKPSTAVEYLAAHLSK .: : : .::: . : :..: ... .. :.:: :::: . . mKIAA4 VK-TGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPP 170 180 190 200 210 220 230 240 250 260 270 280 mKIAA1 IHGLDWHPDSEHIFATSSQDNSVKFWDYRQPRKYLNILPCQVPVWKARYTPFSNGLVT-- . . . :....:. :.. ::..:.::: . : : . . .: :.. :: mKIAA4 VSFVKFSPNGKYIL-TATLDNTLKLWDYSRGR----CLKTYTGHKNEKYCLFASFSVTGR 230 240 250 260 270 290 300 310 320 330 340 mKIAA1 VMVPQLRRENSLLLWNASDLNAPVHTFVGHDDVVLEFQWRRQKEGSKDYQLVTWSRDQTL : . ..: . .:: . . :. . :: :::. . :. . : :.:. mKIAA4 KWVVSGSEDNMVYIWNLQTKEI-VQRLQGHTDVVISAACHPTKNIIASAAL---ENDKTI 280 290 300 310 320 330 350 360 370 380 390 400 mKIAA1 RMWRVDYQMQRLCANDILDGVDEFIESISLLPEPEKTPHPQDIDHQPSLSHGEEDAIKED ..: : mKIAA4 KVWSSDC 340 >>mKIAA0696 ( 555 res) mbh00867 (555 aa) initn: 58 init1: 58 opt: 170 Z-score: 150.8 bits: 38.6 E(): 0.003 Smith-Waterman score: 170; 23.361% identity (26.887% ungapped) in 244 aa overlap (109-343:310-530) 80 90 100 110 120 130 mKIAA1 GHRKISRQSKWDIGAVQWNPHDSFAHYFAASSNQRVDLYKWKDGSGEVGTTLQGHTRVIS ::.. : . : ..::: .:: :.... mKIAA0 KSSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRV--WDVNTGEVLNTLIHHNEAVL 280 290 300 310 320 330 140 150 160 170 180 190 mKIAA1 DLDWAVFEPDLLVTSSVDTYIYIWDIKDTRKPTVALSAVAGASQVKWNKKNANYLAT-SH : : :.:: : : : .::. .. :. :. . :. . .:... : mKIAA0 HLR---FSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASG 340 350 360 370 380 390 200 210 220 230 240 250 mKIAA1 DGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHIFATSSQDNSVKFWDYRQPRKYL : ...:. . :. : .: : :... ... ...:.::....:: . : mKIAA0 DRTIKVWST-STCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-ACL 400 410 420 430 440 260 270 280 290 300 mKIAA1 NILPCQVPVWKARYTPFSNGLVTVMVPQLRRENSLLLWN---ASDLNAP-----VHTFVG .: . . .: :.: .. . .... .:. : : :: ..:.: mKIAA0 RVLEGHEEL--VRCIRFDNKRIVSGA----YDGKIKVWDLQAALDPRAPASTLCLRTLVE 450 460 470 480 490 500 310 320 330 340 350 360 mKIAA1 HDDVVLEFQWRRQKEGSKDYQLVTWSRDQTLRMWRVDYQMQRLCANDILDGVDEFIESIS :. :...:. ..:... :.:.:. .: mKIAA0 HSGRVFRLQF-------DEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR 510 520 530 540 550 370 380 390 400 410 420 mKIAA1 LLPEPEKTPHPQDIDHQPSLSHGEEDAIKEDPPSSLLEEKRSDQLGLPQTLQQEFSLINV >>mKIAA4123 ( 639 res) mbg05860 (639 aa) initn: 74 init1: 58 opt: 165 Z-score: 145.9 bits: 37.9 E(): 0.0055 Smith-Waterman score: 174; 20.270% identity (22.727% ungapped) in 222 aa overlap (119-334:362-565) 90 100 110 120 130 140 mKIAA1 WDIGAVQWNPHDSFAHYFAASSNQRVDLYKWKDGSGEVGTTLQGHTRVISDLDWAVFEPD : .. : : ::: . :. .. mKIAA4 CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQ---YDER 340 350 360 370 380 150 160 170 180 190 200 mKIAA1 LLVTSSVDTYIYIWDIKDTRKPTVALSAVAGASQVKWNKKNANYLATSHDGDVRIWDKRK ...:.: :. . .::.. . .. . .. ....: :. ... :.: .. .:: . mKIAA4 VIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMAS 390 400 410 420 430 440 210 220 230 240 250 260 mKIAA1 PS--TAVEYLAAHLSKIHGLDWHPDSEHIFATSSQDNSVKFWDYRQPR--KYLNILPCQV :. : . :..: . .. .:. :...: ...: : ..: :. . . :: . mKIAA4 PTDITLRRVLVGHRAAVNVVDF--DDKYI-VSASGDRTIKVWNTSTCEFVRTLNGHKRGI 450 460 470 480 490 500 270 280 290 300 310 320 mKIAA1 PVWKARYTPFSNGLVTVMVPQLRRENSLLLWNASDLNAPVHTFVGHDDVV--LEFQWRRQ . : .: .:.. ::. . .: .... ::...: ..:. .: mKIAA4 ACLQYRDRLVVSG---------SSDNTIRLWDI-ECGACLRVLEGHEELVRCIRFDNKRI 510 520 530 540 550 330 340 350 360 370 380 mKIAA1 KEGSKDYQLVTWSRDQTLRMWRVDYQMQRLCANDILDGVDEFIESISLLPEPEKTPHPQD :. : .. .:. mKIAA4 VSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILI 560 570 580 590 600 610 1022 residues in 1 query sequences 1767995 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:55:56 2006 done: Mon Mar 27 10:55:57 2006 Scan time: 1.020 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]