FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0668.ptfa, 739 aa vs ./tmplib.26680 library 1768278 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.1715+/-0.0059; mu= 5.2500+/- 0.393 mean_var=175.7719+/-40.952, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.0967 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0810 ( 920 res) mpm11116 ( 920) 1026 156 1.8e-38 mKIAA4118 ( 248 res) mfj41141 ( 248) 556 90 4.1e-19 >>mKIAA0810 ( 920 res) mpm11116 (920 aa) initn: 1171 init1: 965 opt: 1026 Z-score: 783.0 bits: 155.8 E(): 1.8e-38 Smith-Waterman score: 1139; 38.137% identity (44.376% ungapped) in 569 aa overlap (232-737:367-918) 210 220 230 240 250 260 mKIAA0 FFGSSSGYSSEDDLAGYTDSDQHSSGSRLRSAASRAGSFVWTLVTFPGRLFGLLYWWIGT :.: . : .: :. ::. . .::.:. mKIAA0 HRVAGAMGRLCIYTGDLLVQALRRTRAAGWSVAEAVWSVLWLAVSAPGKAASGTFWWLGS 340 350 360 370 380 390 270 280 290 300 310 mKIAA0 TWYRLTTAASLLDVFVLTRS-RHFSLNLKSFLWFLLLLLLL-TGLT-YGAWHFYPLGLQT ::...: : :.::.::: :.. : :. .: ::::: .:.. .: .:. . mKIAA0 GWYQFVTLISWLNVFLLTRCLRNIC---KVFVLLLPLLLLLGAGVSLWGQGNFF-----S 400 410 420 430 440 320 330 340 350 mKIAA0 LQPAVVSWWAAKESRK---------------QPEVWESRDASQHFQAE---QRVLS---R : : :..: : . ... .: .. ::: : :.: : . mKIAA0 LLP-VLNWTAMQPTQRVDDSKGMHRPGPLPPSPPPKVDHKASQWPQESDMGQKVASLSAQ 450 460 470 480 490 500 360 370 380 390 400 410 mKIAA0 VHSLERRLEALAADFSSNWQKEAIRLERLEL-RQGAAGHGGGSSLSHEDALSLLEGLVSR :. ..:: :... :: ::..... :.: . . .: . .. .: .. mKIAA0 CHNHDERL----AELTVLLQKLQIRVDQVDDGREGLSLWVKNVVGQHLQEMGTIEPPDAK 510 520 530 540 550 560 420 430 440 450 460 470 mKIAA0 RE-ATLKEDLRRDTVAHIQEELATLRAEHHQDSEDLFKKIVQASQESEA-----RVQQLK . :...: .. ...... : : . . ...: . ..:....: :::.:. mKIAA0 TDFMTFHHD-HEVRLSNLEDVLRKLTEKSEAIQKELEETKLKAGSRDEEQPLLDRVQHLE 570 580 590 600 610 620 480 490 500 mKIAA0 TEWKV-ESQFPDWIR----------------QFLLGD--RGAR---------SGLLQRDE : .. .::. :: . :..... .:. : ....:: mKIAA0 LELNLLKSQLSDWQHLKTSCEQAGARIQETVQLMFSEDQQGGSLEWLLEKLSSRFVSKDE 630 640 650 660 670 680 510 520 530 540 550 mKIAA0 MHAQLQELENKIL---TKMAEMQGKS-AREAAASLGQILQKEGIVGVTEEQVHRIVKQAL ... :..:: :.: :. . :.. . :: .: ... :: :.:: :.: ::..:: mKIAA0 LQVLLHDLELKLLQNITHHITVTGQAPTSEAIVS---AVNQAGISGITEAQAHIIVNNAL 690 700 710 720 730 560 570 580 590 600 610 mKIAA0 QRYSEDRIGMVDYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDV . ::.:. ::::.::::::.:..:::::::::::::::::::.:::: ::::::..:::. mKIAA0 KLYSQDKTGMVDFALESGGGSILSTRCSETYETKTALLSLFGVPLWYFSQSPRVVIQPDI 740 750 760 770 780 790 620 630 640 650 660 670 mKIAA0 HPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQ .:::::::.: ::. ::::: .: ::. :.::.::.:::...:::::::::..:.. . : mKIAA0 YPGNCWAFKGSQGYLVVRLSMKIYPTTFTMEHIPKTLSPTGNISSAPKDFAVYGLETEYQ 800 810 820 830 840 850 680 690 700 710 720 730 mKIAA0 QEGTLLGTFAYDQDGEPIQTFYFQASKMATYQVVELRILTNWGHPEYTCIYRFRVHGEPA .:: :: :.:::.:. .: :. ..:.::::.:.:::::::::.::::::::: mKIAA0 EEGQPLGRFTYDQEGDSLQMFHTLERPDQAFQIVELRVLSNWGHPEYTCLYRFRVHGEPI 860 870 880 890 900 910 mKIAA0 H mKIAA0 Q 920 >>mKIAA4118 ( 248 res) mfj41141 (248 aa) initn: 515 init1: 339 opt: 556 Z-score: 435.6 bits: 89.7 E(): 4.1e-19 Smith-Waterman score: 556; 38.785% identity (39.336% ungapped) in 214 aa overlap (522-735:19-229) 500 510 520 530 540 550 mKIAA0 GARSGLLQRDEMHAQLQELENKILTKMAEMQGKSAREAAASLGQILQKEGIVGVTEEQVH ::.. .. : :.. :.:: . .: . . mKIAA4 PHGTHLPNYSQYHHRVHSQGQQLQQLQAELNK-LHKE-VSSVRAAHSE 10 20 30 40 560 570 580 590 600 610 mKIAA0 RIVKQALQRYSEDRIGMVDYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPR :..: ..:: .:: . :::: : :::. . : :: ... . .: ... : mKIAA4 RVAKLVFQRLNEDFVRKPDYALSSVGASIDLEKTSSDYEDQNTAYFWNRLSFWNYARPPS 50 60 70 80 90 100 620 630 640 650 660 670 mKIAA0 VILQPDVHPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIF :::.::: :::::::.: .: .:.:: .... . .::.: : ... .. ::::.:::.. mKIAA4 VILEPDVFPGNCWAFEGDKGQVVIRLPGHVQLSDITLQHPPPTVAHTGGASSAPRDFAVY 110 120 130 140 150 160 680 690 700 710 720 730 mKIAA0 GFDEDLQQEGTLLGTFAYDQDGEPIQTFYFQASKMATYQVVELRILTNWGHPEYTCIYRF :.. : . : ..:: : .: . ::::..: . ... :...::.:::::..::.:: mKIAA4 GLQADDETE-VFLGKFIFDVQKSEIQTFHLQNDPPSAFPKVKIQILSNWGHPRFTCLYRV 170 180 190 200 210 220 mKIAA0 RVHGEPAH :.:: mKIAA4 RAHGVRTSEWADDNATGVTGGPH 230 240 739 residues in 1 query sequences 1768278 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:25:50 2006 done: Mon Mar 27 10:25:51 2006 Scan time: 0.900 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]