FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4251.ptfa, 630 aa
 vs ./tmplib.26680 library

1768387 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.9098+/-0.00428; mu= 15.8665+/- 0.287
 mean_var=95.5408+/-22.057, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1312

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1186  ( 404 res)   mbp00156                   ( 404)  627  129 8.7e-31


>>mKIAA1186  ( 404 res)   mbp00156                        (404 aa)
 initn: 576 init1: 449 opt: 627  Z-score: 645.1  bits: 128.9 E(): 8.7e-31
Smith-Waterman score: 627;  32.515% identity (34.528% ungapped) in 326 aa overlap (163-480:6-320)

            140       150       160       170       180        190 
mKIAA4 GENLSSPGTASEPVVGTPDDKLDADYIKRYLGDLTPLQESCLIRLRQWLQETHKG-KIPK
                                     .:::.: ::  : ..:. .:..      : 
mKIAA1                          TMSGRVGDLSPKQEEALAKFRENVQDVLPTLPNPD
                                        10        20        30     

             200       210       220       230       240       250 
mKIAA4 DEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILDTWTPPQVLLDYYAGGWHHHDK
       :  .::.::::.:...:.. .. . . .:::...: :. .: ::.:. .: .::   .: 
mKIAA1 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDKII-SWQPPEVIQQYLSGGRCGYDL
          40        50        60        70         80        90    

             260       270       280       290       300       310 
mKIAA4 DGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINEEGLRRCEENTKVFGRPISSWTCLV
       :: :..   .: .:.:::. . ... :::  .   :  :..: ..:  .:. : . : . 
mKIAA1 DGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRDCELLLQECIQQTTKLGKKIETITMIY
          100       110       120       130       140       150    

             320       330       340       350       360       370 
mKIAA4 DLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNT
       : :::...:::.:.:.:  ... . : :::::: ::....::..::: ..:..::....:
mKIAA1 DCEGLGLKHLWKPAVEAYGEFLTMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDT
          160       170       180       190       200       210    

             380              390       400       410       420    
mKIAA4 RRKFLIYAGN------DYQGPGGL-LDYIDKEIIPDFLSGECMCDVPEGGLVPKSLYRTA
       :::... ..:       . .:  : ..:      ::  . .:   .  :: .::. :   
mKIAA1 RRKIMVLGANWKEVLLKHISPDQLPVEYGGTMTDPDG-NPKCKSKINYGGDIPKQYYVR-
          220       230       240       250        260       270   

          430       440       450       460       470       480    
mKIAA4 EELENEDLKLWTETIYQSASVFKGAPHEILIQIVDASSVITWDFDVCKGDIVFNIYHSKR
            ...:   :   :   : .:. :..  .:.  . :. :.:    .:. :.:.    
mKIAA1 -----DQVKQQYEHTVQ---VSRGSSHQVEYEILFPGCVLRWQFMSEGSDVGFGIFLKTK
                 280          290       300       310       320    

          490       500       510       520       530       540    
mKIAA4 SPQPPKKDSLGAHSITSPGGNNVQLIDKVWQLGRDYSMVESPLICKEGESVQGSHVTRWP
                                                                   
mKIAA1 MGERQRAGEMTEVLPNQRYNSHMVPEDGTLTCSEPGIYVLRFDNTYSFIHAKKVSFTVEV
          330       340       350       360       370       380    




630 residues in 1 query   sequences
1768387 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:06:29 2006 done: Mon Mar 27 11:06:30 2006
 Scan time:  0.800 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]