FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1336.ptfa, 929 aa vs ./tmplib.26680 library 1768088 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.0258+/-0.00438; mu= 20.4266+/- 0.294 mean_var=86.1010+/-19.259, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.1382 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1397 ( 736 res) mbg12832 ( 736) 400 91 7.9e-19 mFLJ00025 ( 1204 res) mfj36335 (1204) 146 40 0.0018 >>mKIAA1397 ( 736 res) mbg12832 (736 aa) initn: 357 init1: 196 opt: 400 Z-score: 430.4 bits: 90.6 E(): 7.9e-19 Smith-Waterman score: 501; 27.733% identity (31.860% ungapped) in 494 aa overlap (7-450:53-532) 10 20 30 mKIAA1 RALTAVGRLLRVPTMFFYLSKKIAVPNNVKLK--CI : .: . .. :: : ::.. : : : mKIAA1 KPIKELGLKFLSTFKVKYFIEKSMYAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCR 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 SWNKDQGFIACGGEDGLLKVLRLETQTDDSKLRGLAAPSNLSMNQNLEGHSGAVQVVTWN ..:..: :. :.. : : :.. : ..:. . : ::.::.. : .: :: mKIAA1 RRYYEEGWLATGNGRGVVGV----TFTSSHCRRDRSTPQRI--NFNLRGHNSEVVLVRWN 90 100 110 120 130 100 110 120 130 140 150 mKIAA1 EQYQKLTTSDQNGLIIVWMLYKGSWYEEMINNRNKSVVRSMSWNADGQKICIVYEDGAVI : ::::.: : .: :.::. :.: : :..:.:. .: ...:. :: . : :.:: :. mKIAA1 EPYQKLATCDADGGIFVWIQYEGRWSVELVNDRGAQV-SDFTWSHDGTQALISYRDGFVL 140 150 160 170 180 190 160 170 180 190 200 mKIAA1 VGSVDGNRIWGK--DLKGIQLCHVTWSADSKILLFGMANGEIHIYDNQGNF--------- ::::.:.: :.. .:.. : . :. :.. .::: :.:.. ..: .: . mKIAA1 VGSVSGQRHWSSEINLESQITCGI-WTPDDQQVLFGTADGQVIVMDCHGRMLAHVLLHES 200 210 220 230 240 250 210 220 230 240 250 mKIAA1 --IMKMKLN---CLVNVTGAISIAGIHW---YHGTEGY---VEPDCPCLAICFDNGRCQI :..:. : ::. .. . . . : .: :. : :.. : .: .. mKIAA1 DGILSMSWNYPIFLVEDSSESDTDSDDYSPPQDGPAAYPIPVQNTKPLLTVSFTSGDISL 260 270 280 290 300 310 260 270 280 290 300 mKIAA1 MRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDIN-------IVQFYTP : . .: .:..: .:. : :: :..::::: .. . .. : .:.::. mKIAA1 MNNYDDLSPTVIRSGLKEVVAQWCTQGDLLAVAGMEQQAQLSELPNGPLLKSAMVKFYNV 320 330 340 350 360 370 310 320 330 340 350 360 mKIAA1 FGEHLGTLK-VPGKQMCSLSWEGGGLKIALAVDSFIYFANI--RPDYKWGYCSNTVVYAY :::. :: . . . :. : .. .: .: . . : . :..... . mKIAA1 RGEHIFTLDTLVQRPIISICWGHRDSRLLMASGPALYVVRVEHRVSSLQLLCQQAIA-ST 380 390 400 410 420 430 370 380 390 400 mKIAA1 TRPDR--------PEYCVVFWDTKNSEKYVKYVKSLI-SITTCGDFCILATKADE----N : :. :. : . : .. .: : . .. :: . ..: . mKIAA1 LREDKDVNKLTLPPRLCSYL-----STAFIPTIKPPIPDPNNMRDFVSYPSAGNERLHCT 440 450 460 470 480 410 420 430 440 450 460 mKIAA1 HPQEENEMETFGATFVLVLCNSIG-TP-LDPKYID-LVPLFVAMTKTHVIAASKEAFYTW . :.. :. : ..: : : .: : . :. : : :: : mKIAA1 MKRTEDDPEVGGPCYTLYLEYLGGLVPILKGRRISKLRPEFVIMDPRTDSKSDEIYGNSL 490 500 510 520 530 540 470 480 490 500 510 520 mKIAA1 QYRVAKKLTALEINQITRSRKEGRERIYHVDDVPSGSVDGVFDYSKAIQGTRDPICAITA mKIAA1 ISTVIDSCNCSDSSDIELSDDWAAKKSPKISRSSKSPKLPRISIEARKSPKLPRAAQEIS 550 560 570 580 590 600 >>mFLJ00025 ( 1204 res) mfj36335 (1204 aa) initn: 216 init1: 89 opt: 146 Z-score: 154.6 bits: 40.3 E(): 0.0018 Smith-Waterman score: 248; 18.579% identity (22.679% ungapped) in 802 aa overlap (73-848:63-745) 50 60 70 80 90 100 mKIAA1 IACGGEDGLLKVLRLETQTDDSKLRGLAAPSNLSMNQNLEGHSGAVQVVTWNEQYQKLTT :. .. : :.::. .: :.. .. ..... mFLJ00 AEQCIYDLAFKPDGTQLILAAGNRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFAS 40 50 60 70 80 90 110 120 130 140 150 160 mKIAA1 SDQNGLIIVWMLYKGSWYEEMINNRNKSVVRSMSWNADGQKI--CIVYEDGAVIVGSVDG .. . ::.: : : ... ... .. .:.: ... : . : . : . mFLJ00 GSADKSIIIWT----SKLEGILKYTHNDSIQCVSYNPVTHQLASCSSSDFG---LWSPEQ 100 110 120 130 140 170 180 190 200 210 220 mKIAA1 NRIWGKDLKGIQLCHVTWSADSKILLFGMANGEIHIYDNQGNFIMKMKLNCLVNVTGAIS . . .: .. .. .:. :.. : .::::: : : ...:. .:.. :..: mFLJ00 KSV-SKHKSSSKITCCSWTNDGQYLALGMANGIISIRNKNGEEKVKIE-----RPGGSLS 150 160 170 180 190 230 240 250 260 270 280 mKIAA1 IAGIHWYHGTEGYVEPDCPCLAICFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHIGS : .::.. .: ...: .: . .:.. : mFLJ00 ------------------PIWSICWNPSR-------EEHNDILAVA-------DWGQKLS 200 210 220 290 300 310 320 330 mKIAA1 VLAVAGSQKVVTQDKDINI----VQFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIALAV ..:.: . .:. .:. ....: ::.. . ::. .. .: : . mFLJ00 FYQLSGKQ--IGKDRPLNFDPCCISYFTK-GEYI-LVGGSDKQVSLFTKDGVRLGTVGEQ 230 240 250 260 270 280 340 350 360 370 380 390 mKIAA1 DSFIYFANIRPDYKWGYCSNTVVYAYTRPDRPEYCVVFWDTKN--SEKYVKYVKSLISIT .:... ..:: :: :: . : ..: ... ...:. : :. mFLJ00 NSWVWTCRVKPD------SNYVVVGCQDGTISFYQLIFSTVHGLYKDRYA-YRDSMT--- 290 300 310 320 330 400 410 420 430 440 450 mKIAA1 TCGDFCILATKADENHPQEENEMETFGATFVLVLCNSIGTPLDPKYIDLVPLFVAMTKTH : . .... . :. . . . : .. : :. : . :. mFLJ00 ---DVIVQHLITEQKVRIKCREL----VKKIAIYKNRLAIQL-PEKILIYELYSE----- 340 350 360 370 380 460 470 480 490 500 mKIAA1 VIAASKEAFYTWQYRVAKK----LTALEINQITRSRKEGRERIYHVDDVPS--GSVDGVF : . : . ...:: : .. ..: .: : . . : ...... mFLJ00 ---DSTDMHYRVKEKIVKKFECNLLVVCADHIILC-QEKRLQCLSFSGVKEREWQMESLI 390 400 410 420 430 510 520 530 540 550 560 mKIAA1 DYSKAIQGTRDPICAITASDKTLIVGRESGVIQRYSFPN----VALIQKYSLDCRACQLS : :.: : : :. . :.:: ..: : . : : : : .. : :. mFLJ00 RYIKVIGG---P-----AGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRC----LD 440 450 460 470 480 570 580 590 600 610 620 mKIAA1 LNCNSSRLAIIDIAGVLTFFDLDTRVTDSTGQQVVGELLKLERKDVWDMKWAKDNPDLFA .. . ..::..: . .:. :. ::: ... .. .. : . :.. mFLJ00 MSASRNKLAVVDENDTCLVYDIHTK-----------ELL-FQEPNANSVAWNTQCEDMLC 490 500 510 520 530 630 640 650 660 670 680 mKIAA1 MMEKTRMYVFRNLDPEEPIQTSGYICNFEDLEIKSVLLDEILKDPEHPSKDYIMNFEIRS . . . . : . . .:.. ... .: . . .. : :.. .... :. mFLJ00 FSGGGYLNIKASTFPVHQQKLQGFVVGYNGSKIFCLHVFS-MSAVEVPQSAPMYQYLDRK 540 550 560 570 580 590 690 700 710 720 730 740 mKIAA1 LRDSRALIEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLYTAQQAFVRCKDYQGIKF . : .:. ::. :: :: ::. :.. ::..::.: .: ... mFLJ00 MFKEAYQIACLGVTDAD-----------WRELAMEALEGLEFETARKAFTRVQD---LRY 600 610 620 630 750 760 770 780 790 mKIAA1 VKLLGNLQSESMKQ--------AEVIAYFGRFEDAERMYQDMDRRDLAIGLRMKLGDWFR ..:..... .. . :.:..: :.:..: ..:. ...:.. . : . mFLJ00 LELISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHENLVLDMYTDLCMFEY 640 650 660 670 680 690 800 810 820 830 840 850 mKIAA1 VLQLLKTGSGDADDSLLEQANNAIGEYFADRQKWQNAVQYYVKGRNQERLAECYYMLEDY . ..: :::: .. . ...: .. . .. . ::..:... .. . : mFLJ00 AKDFL--GSGDPKETKMLITKQA--DWARNINEPKAAVEMYISAGEHAKAIEISGSHGWV 700 710 720 730 740 750 860 870 880 890 900 910 mKIAA1 EGLETLANSLPENHKLLPEIAQMFVRVGMCEQAVSAFLKCNQPKAAVDTCVHLNQVRSGQ mFLJ00 DMLIDIARKLDKAEREPLLMCACYFKKLDSPGYAAETYLKIGDLKSLVQLYVDTKRWDEA 760 770 780 790 800 810 929 residues in 1 query sequences 1768088 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:41:28 2006 done: Mon Mar 27 10:41:29 2006 Scan time: 0.960 Display time: 0.110 Function used was FASTA [version 3.4t11 Apr 17, 2002]