FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0056.ptfa, 1505 aa
 vs ./tmplib.26680 library

1767512 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.3992+/-0.00579; mu= 5.7010+/- 0.383
 mean_var=179.6964+/-42.618, 0's: 0 Z-trim: 6  B-trim: 0 in 0/36
 Lambda= 0.0957

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0159  ( 1397 res)   mpm06349                  (1397)  195   41  0.0028


>>mKIAA0159  ( 1397 res)   mpm06349                       (1397 aa)
 initn: 207 init1: 170 opt: 195  Z-score: 151.2  bits: 40.6 E(): 0.0028
Smith-Waterman score: 201;  23.276% identity (24.658% ungapped) in 232 aa overlap (915-1146:1030-1248)

          890       900       910       920       930       940    
mKIAA0 HLPSSQGTTDALDSQPPFQPRSSAMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRELE
                                     : : ..:::.:.    .  ...  :   ::
mKIAA0 LDGNQVLAAFVPLLLKVCNNPGLYSNPELCAAASLALGKFCMISAPFCDSQLRLLFTMLE
    1000      1010      1020      1030      1040      1050         

          950       960       970       980       990      1000    
mKIAA0 VSEDVAVRNNVIIVICDLCIRYTVMVDNYIPNISVCLKDSDPFIRKQTLVLLTNLLQEEY
        :   .::.:....  :: ::.  .:: . :.. . :.:    .:: . ...:.:. ...
mKIAA0 KSSLPTVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDM
    1060      1070      1080      1090      1100      1110         

         1010      1020      1030      1040      1050      1060    
mKIAA0 VKWKGSLFFRFVSTLVDSHPDIASLGEFCLAHLLLKRNPTMFFQHFIECIFHFNSYEKHG
       :: ::..  ...  :.:  :.::.:..  . .:  : :   ... . . : .... :   
mKIAA0 VKVKGQVS-EMAVLLIDPVPQIAALAKNFFNELSHKGNA--IYNLLPDIISRLSDPEGGV
    1120       1130      1140      1150        1160      1170      

         1070      1080      1090      1100      1110      1120    
mKIAA0 QYNKFSQSERGKQLFLLKGKTNKEKRMRIYKFLLEHFTDEQRFNVTSKICLNILACFTDG
       . . :    .    .. : : ..         :.:.. .. :   : .   ..  :... 
mKIAA0 EEEPFHTIMKQLLSYITKDKQTES--------LVEKLCQRFRTARTERQYRDLAYCMSQ-
       1180      1190      1200              1210      1220        

         1130      1140      1150      1160      1170      1180    
mKIAA0 ILPMDMEASELLSDTFDILNSKEIKLLAMRAQTSKDLLEEDDVALANVVMQEAQMKIISQ
        ::.  .. . . :.:. ...:                                      
mKIAA0 -LPLTERGLQKMLDNFECFGDKLLDESVFSAFLSIVGKLRRGAKPEGKAIIDEFEQKLRA
       1230      1240      1250      1260      1270      1280      




1505 residues in 1 query   sequences
1767512 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:11:22 2006 done: Mon Mar 27 10:11:24 2006
 Scan time:  1.190 Display time:  0.070

Function used was FASTA [version 3.4t11 Apr 17, 2002]