# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj00701.fasta.nr -Q ../query/mKIAA0258.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0258, 415 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920432 sequences Expectation_n fit: rho(ln(x))= 5.4233+/-0.000184; mu= 9.7021+/- 0.010 mean_var=74.5740+/-14.494, 0's: 46 Z-trim: 48 B-trim: 0 in 0/68 Lambda= 0.148519 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148670513|gb|EDL02460.1| RIKEN cDNA 1110029E03, ( 414) 2679 583.2 3.8e-164 gi|122937426|ref|NP_001073965.1| RGP1 retrograde g ( 431) 2581 562.2 8.3e-158 gi|109111048|ref|XP_001084588.1| PREDICTED: hypoth ( 496) 2581 562.2 9.3e-158 gi|194225470|ref|XP_001497777.2| PREDICTED: RGP1 r ( 423) 2561 557.9 1.6e-156 gi|194034030|ref|XP_001928680.1| PREDICTED: RGP1 r ( 391) 2556 556.8 3.1e-156 gi|158260155|dbj|BAF82255.1| unnamed protein produ ( 391) 2553 556.1 4.9e-156 gi|126334756|ref|XP_001367906.1| PREDICTED: hypoth ( 391) 2420 527.7 1.9e-147 gi|122136953|sp|Q2T9P3.1|RGP1_BOVIN RecName: Full= ( 394) 2413 526.2 5.3e-147 gi|74206640|dbj|BAE41575.1| unnamed protein produc ( 363) 2404 524.2 1.9e-146 gi|149565674|ref|XP_001518701.1| PREDICTED: hypoth ( 597) 2339 510.4 4.4e-142 gi|149045758|gb|EDL98758.1| similar to hypothetica ( 401) 2128 465.1 1.3e-128 gi|148670512|gb|EDL02459.1| RIKEN cDNA 1110029E03, ( 403) 2128 465.1 1.3e-128 gi|56788832|gb|AAH88518.1| Hypothetical LOC496821 ( 387) 1758 385.8 9.2e-105 gi|49118745|gb|AAH72873.1| MGC80288 protein [Xenop ( 387) 1729 379.6 6.9e-103 gi|49902786|gb|AAH75984.1| RGP1 retrograde golgi t ( 386) 1696 372.5 9.2e-101 gi|115625716|ref|XP_001184203.1| PREDICTED: hypoth ( 432) 1170 259.8 8.5e-67 gi|89269545|emb|CAJ83073.1| novel protein [Xenopus ( 359) 1158 257.2 4.4e-66 gi|156210487|gb|EDO31658.1| predicted protein [Nem ( 391) 1059 236.0 1.1e-59 gi|193676195|ref|XP_001952273.1| PREDICTED: simila ( 391) 1011 225.7 1.4e-56 gi|91087061|ref|XP_974794.1| PREDICTED: similar to ( 387) 970 217.0 6.2e-54 gi|215505643|gb|EEC15137.1| conserved hypothetical ( 381) 914 205.0 2.5e-50 gi|210103107|gb|EEA51147.1| hypothetical protein B ( 385) 897 201.3 3.2e-49 gi|167877092|gb|EDS40475.1| conserved hypothetical ( 396) 861 193.6 6.8e-47 gi|47212589|emb|CAG12814.1| unnamed protein produc ( 337) 859 193.1 8e-47 gi|198435630|ref|XP_002127763.1| PREDICTED: simila ( 386) 826 186.1 1.2e-44 gi|156543838|ref|XP_001606678.1| PREDICTED: simila ( 379) 783 176.9 7e-42 gi|212515077|gb|EEB17277.1| conserved hypothetical ( 386) 748 169.4 1.3e-39 gi|108879904|gb|EAT44129.1| conserved hypothetical ( 406) 648 148.0 3.8e-33 gi|210103110|gb|EEA51150.1| hypothetical protein B ( 791) 649 148.4 5.6e-33 gi|193895925|gb|EDV94791.1| GH17709 [Drosophila gr ( 422) 644 147.1 7.1e-33 gi|194143290|gb|EDW59693.1| GJ10143 [Drosophila vi ( 432) 637 145.6 2e-32 gi|54639151|gb|EAL28553.1| GA10805 [Drosophila pse ( 434) 632 144.6 4.3e-32 gi|194112295|gb|EDW34338.1| GL21632 [Drosophila pe ( 435) 630 144.1 5.8e-32 gi|194169863|gb|EDW84764.1| GK12960 [Drosophila wi ( 433) 617 141.4 4e-31 gi|30177277|gb|EAA44830.1| AGAP003042-PA [Anophele ( 429) 613 140.5 7.2e-31 gi|190628812|gb|EDV44336.1| GF18927 [Drosophila an ( 439) 608 139.4 1.5e-30 gi|193917009|gb|EDW15876.1| GI22539 [Drosophila mo ( 428) 607 139.2 1.7e-30 gi|194182121|gb|EDW95732.1| GE25453 [Drosophila ya ( 441) 597 137.1 7.9e-30 gi|23170418|gb|AAF52065.2| CG1116, isoform A [Dros ( 442) 587 134.9 3.5e-29 gi|190650593|gb|EDV47848.1| GG12649 [Drosophila er ( 441) 585 134.5 4.7e-29 gi|194133394|gb|EDW54910.1| GM10792 [Drosophila se ( 442) 576 132.6 1.8e-28 gi|190586435|gb|EDV26488.1| hypothetical protein T ( 300) 572 131.6 2.4e-28 gi|23170420|gb|AAN13262.1| CG1116, isoform B [Dros ( 360) 505 117.3 5.8e-24 gi|194198105|gb|EDX11681.1| GD19766 [Drosophila si ( 360) 504 117.1 6.7e-24 gi|115917948|ref|XP_001188953.1| PREDICTED: hypoth ( 156) 478 111.3 1.6e-22 gi|115958880|ref|XP_001181646.1| PREDICTED: hypoth ( 148) 429 100.8 2.2e-19 gi|187031276|emb|CAP29337.1| Hypothetical protein ( 329) 342 82.4 1.7e-13 gi|154147328|emb|CAE17898.2| C. elegans protein M0 ( 366) 278 68.7 2.6e-09 gi|154703151|gb|EDO02890.1| hypothetical protein S ( 772) 242 61.2 9.8e-07 gi|4731918|gb|AAD28551.1|AF111944_1 development pr ( 249) 228 57.9 3.1e-06 >>gi|148670513|gb|EDL02460.1| RIKEN cDNA 1110029E03, iso (414 aa) initn: 2679 init1: 2679 opt: 2679 Z-score: 3103.2 bits: 583.2 E(): 3.8e-164 Smith-Waterman score: 2679; 99.749% identity (99.749% similar) in 399 aa overlap (17-415:16-414) 10 20 30 40 50 60 mKIAA0 RDRLRGCHRAPSRSRRGGFGSGAAMIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATS : :::::::::::::::::::::::::::::::::::::::::: gi|148 DSADATELRAGLAGAGRFGSGAAMIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATS 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPP 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 KILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPL 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 RVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRSLHLYNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRSLHLYNI 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 SDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTG 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 VAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGL 300 310 320 330 340 350 370 380 390 400 410 mKIAA0 VLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSSITI ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSSITI 360 370 380 390 400 410 >>gi|122937426|ref|NP_001073965.1| RGP1 retrograde golgi (431 aa) initn: 2581 init1: 2581 opt: 2581 Z-score: 2989.5 bits: 562.2 E(): 8.3e-158 Smith-Waterman score: 2581; 96.962% identity (99.241% similar) in 395 aa overlap (21-415:37-431) 10 20 30 40 50 mKIAA0 RDRLRGCHRAPSRSRRGGFGSGAAMIEVVAELSRGPVFLAGEALECVVTV :::::::::::::::::::::::::::::: gi|122 GLACRALPAGRDSAEGLGVPIPSVDYARSDSGAAMIEVVAELSRGPVFLAGEALECVVTV 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA0 TNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 TNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGE 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA0 RGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVN :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|122 RGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVN 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA0 SPITLLRVPLRVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAAT :::::::::::::::::::::.:::::::::::::::::..::::::::::::::::::: gi|122 SPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAAT 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA0 SCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 SCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQ 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA0 PEYQRRRGTGVAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHF ::::::::.: .::::::::::::::::::::::::::::: :::::::::::::::::: gi|122 PEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHF 310 320 330 340 350 360 360 370 380 390 400 410 mKIAA0 EFVTSREPGLVLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPST :::::::::::::::.:::::.::::::::::::::::::::::::::::.::::::::: gi|122 EFVTSREPGLVLLPPVEQPEPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPST 370 380 390 400 410 420 mKIAA0 SSITI :.::: gi|122 STITI 430 >>gi|109111048|ref|XP_001084588.1| PREDICTED: hypothetic (496 aa) initn: 2581 init1: 2581 opt: 2581 Z-score: 2988.6 bits: 562.2 E(): 9.3e-158 Smith-Waterman score: 2581; 96.962% identity (99.241% similar) in 395 aa overlap (21-415:102-496) 10 20 30 40 50 mKIAA0 RDRLRGCHRAPSRSRRGGFGSGAAMIEVVAELSRGPVFLAGEALECVVTV :::::::::::::::::::::::::::::: gi|109 RGKVTLGAGTTRALSGLGVLIPSVDYARSDSGAAMIEVVAELSRGPVFLAGEALECVVTV 80 90 100 110 120 130 60 70 80 90 100 110 mKIAA0 TNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGE 140 150 160 170 180 190 120 130 140 150 160 170 mKIAA0 RGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVN :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|109 RGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVN 200 210 220 230 240 250 180 190 200 210 220 230 mKIAA0 SPITLLRVPLRVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAAT :::::::::::::::::::::.:::::::::::::::::..::::::::::::::::::: gi|109 SPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAAT 260 270 280 290 300 310 240 250 260 270 280 290 mKIAA0 SCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQ 320 330 340 350 360 370 300 310 320 330 340 350 mKIAA0 PEYQRRRGTGVAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHF ::::::::.: .::::::::::::::::::::::::::::: :::::::::::::::::: gi|109 PEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHF 380 390 400 410 420 430 360 370 380 390 400 410 mKIAA0 EFVTSREPGLVLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPST :::::::::::::::.:::::.::::::::::::::::::::::::::::.::::::::: gi|109 EFVTSREPGLVLLPPVEQPEPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPST 440 450 460 470 480 490 mKIAA0 SSITI :.::: gi|109 STITI >>gi|194225470|ref|XP_001497777.2| PREDICTED: RGP1 retro (423 aa) initn: 2561 init1: 2561 opt: 2561 Z-score: 2966.4 bits: 557.9 E(): 1.6e-156 Smith-Waterman score: 2561; 95.949% identity (98.987% similar) in 395 aa overlap (21-415:29-423) 10 20 30 40 50 mKIAA0 RDRLRGCHRAPSRSRRGGFGSGAAMIEVVAELSRGPVFLAGEALECVVTVTN : :::::::::::::::::::::::::::::: gi|194 MVPGLEPAGTKYLASQVLMRATVVVRSESRAAMIEVVAELSRGPVFLAGEALECVVTVTN 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA0 PLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERG ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|194 PLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPESQTVFLPHRGERG 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA0 QCILSTPPKILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSP :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|194 QCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSP 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA0 ITLLRVPLRVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSC :::::::::::::::.::..:::::::::::::::::..::::::::::::::::::::: gi|194 ITLLRVPLRVLVLTGFQDTRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSC 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA0 RSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPE ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|194 RSLHLYNISDGRGKIGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPE 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA0 YQRRRGTGVAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEF ::::::.: :::::::::::::::::::::::::::::: :::::::::::::::::::: gi|194 YQRRRGAGGAPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEF 310 320 330 340 350 360 360 370 380 390 400 410 mKIAA0 VTSREPGLVLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSS :::::::::::::.:::::.::::::::::::::::::::::::::::.::::::::::. gi|194 VTSREPGLVLLPPMEQPEPVTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTST 370 380 390 400 410 420 mKIAA0 ITI ::: gi|194 ITI >>gi|194034030|ref|XP_001928680.1| PREDICTED: RGP1 retro (391 aa) initn: 2556 init1: 2556 opt: 2556 Z-score: 2961.1 bits: 556.8 E(): 3.1e-156 Smith-Waterman score: 2556; 96.931% identity (98.977% similar) in 391 aa overlap (25-415:1-391) 10 20 30 40 50 60 mKIAA0 RDRLRGCHRAPSRSRRGGFGSGAAMIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATS :::::::::::::::::::::::::::::::::::: gi|194 MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATS 10 20 30 70 80 90 100 110 120 mKIAA0 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPP ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|194 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPESQTVFLPHRGERGQCILSTPP 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 KILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPL :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: gi|194 KILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPL 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 RVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRSLHLYNI :::::::::::.:::::::::::::::::..::::::::::::::::::::::::::::: gi|194 RVLVLTGLQDVQFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNI 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 SDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|194 SDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAG 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 VAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGL :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: gi|194 GAPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGL 280 290 300 310 320 330 370 380 390 400 410 mKIAA0 VLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSSITI ::::: :::::.::::::::::::::::::::::::::::.::::::::::.::: gi|194 VLLPPTEQPEPVTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI 340 350 360 370 380 390 >>gi|158260155|dbj|BAF82255.1| unnamed protein product [ (391 aa) initn: 2553 init1: 2553 opt: 2553 Z-score: 2957.6 bits: 556.1 E(): 4.9e-156 Smith-Waterman score: 2553; 96.675% identity (99.233% similar) in 391 aa overlap (25-415:1-391) 10 20 30 40 50 60 mKIAA0 RDRLRGCHRAPSRSRRGGFGSGAAMIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATS :::::::::::::::::::::::::::::::::::: gi|158 MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATS 10 20 30 70 80 90 100 110 120 mKIAA0 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPP 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 KILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPL :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: gi|158 KILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPL 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 RVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRSLHLYNI :::::::::::.:::::::::::::::::..::::::::::::::::::::::::::::: gi|158 RVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNI 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 SDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTG :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::.: gi|158 SDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTAACLQFSVSLQTEERVQPEYQRRRGAG 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 VAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGL .::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: gi|158 GVPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGL 280 290 300 310 320 330 370 380 390 400 410 mKIAA0 VLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSSITI :::::.:::::.::::::::::::::::::::::::::::.::::::::::.::: gi|158 VLLPPVEQPEPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI 340 350 360 370 380 390 >>gi|126334756|ref|XP_001367906.1| PREDICTED: hypothetic (391 aa) initn: 2420 init1: 2420 opt: 2420 Z-score: 2803.6 bits: 527.7 E(): 1.9e-147 Smith-Waterman score: 2420; 91.816% identity (97.442% similar) in 391 aa overlap (25-415:1-391) 10 20 30 40 50 60 mKIAA0 RDRLRGCHRAPSRSRRGGFGSGAAMIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATS :::.:::::::::::::::::::::::::: ::::: gi|126 MIELVAELSRGPVFLAGEALECVVTVTNPLSPTATS 10 20 30 70 80 90 100 110 120 mKIAA0 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPP ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|126 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPESQTVFLPHRGERGQCILSTPP 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 KILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPL ::::::::::::::::::::::::.::::::::::::::::::::::::: ::::::::: gi|126 KILFCDLRLDPGESKSYSYSEVLPVEGPPSFRGQSVKYVYKLTIGCQRVNCPITLLRVPL 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 RVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRSLHLYNI :::::::.::. :::::.::::::::::.. :.::: ::::::: :::::: :::.:::: gi|126 RVLVLTGFQDALFPQDEVVAPSSPFLEEEEVGRKDSRLAELAGEFLMAATSRRSLYLYNI 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 SDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTG :::::::::::::::::::::::.::::::::::::::::::::::: ::::::::::.. gi|126 SDGRGKVGTFGIFKSVYRLGEDVIGTLNLGEGTVACLQFSVSLQTEETVQPEYQRRRGAS 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 VAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGL .::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: gi|126 GTPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGL 280 290 300 310 320 330 370 380 390 400 410 mKIAA0 VLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSSITI .::::.:::.:..::::::::::::::::::::::::::::::::::::.:..:: gi|126 TLLPPMEQPKPVVWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSASTVTI 340 350 360 370 380 390 >>gi|122136953|sp|Q2T9P3.1|RGP1_BOVIN RecName: Full=Retr (394 aa) initn: 2413 init1: 2413 opt: 2413 Z-score: 2795.5 bits: 526.2 E(): 5.3e-147 Smith-Waterman score: 2413; 96.467% identity (99.457% similar) in 368 aa overlap (25-392:1-368) 10 20 30 40 50 60 mKIAA0 RDRLRGCHRAPSRSRRGGFGSGAAMIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATS :::::::::::::::::::::::::::::::::::: gi|122 MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATS 10 20 30 70 80 90 100 110 120 mKIAA0 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPP ::::::::::::::::::::::::::::::::::::::.::::.:::::::::::::::: gi|122 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPESQTVLLPHRGERGQCILSTPP 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 KILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPL ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|122 KILFCDLRLDPGESKSYSYSEVLPVEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPL 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 RVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRSLHLYNI :::::::::::.:::::::::::::::::..:::::::.::::::::::::::::::::: gi|122 RVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLTELAGERLMAATSCRSLHLYNI 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 SDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTG ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::.: gi|122 SDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQYSVSLQTEERVQPEYQRRRGAG 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 VAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGL ::::::.::::::::::::::::::::::: :::::::::::::::::::::::::::: gi|122 GAPSVSHITHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGL 280 290 300 310 320 330 370 380 390 400 410 mKIAA0 VLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSSITI :::::.:::::::::::::::::::::::::: gi|122 VLLPPVEQPEPATWTGPEQVPVDTFSWDLPIKPEASHTFLSVQPASYCYSVRSHIRAI 340 350 360 370 380 390 >>gi|74206640|dbj|BAE41575.1| unnamed protein product [M (363 aa) initn: 2404 init1: 2404 opt: 2404 Z-score: 2785.6 bits: 524.2 E(): 1.9e-146 Smith-Waterman score: 2404; 100.000% identity (100.000% similar) in 356 aa overlap (25-380:1-356) 10 20 30 40 50 60 mKIAA0 RDRLRGCHRAPSRSRRGGFGSGAAMIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATS :::::::::::::::::::::::::::::::::::: gi|742 MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATS 10 20 30 70 80 90 100 110 120 mKIAA0 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPP 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 KILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 KILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPL 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 RVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRSLHLYNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 RVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRSLHLYNI 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 SDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 SDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTG 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA0 VAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGL 280 290 300 310 320 330 370 380 390 400 410 mKIAA0 VLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSSITI :::::::::::::::::::: gi|742 VLLPPLEQPEPATWTGPEQVNWNHVGL 340 350 360 >>gi|149565674|ref|XP_001518701.1| PREDICTED: hypothetic (597 aa) initn: 2336 init1: 2336 opt: 2339 Z-score: 2707.2 bits: 510.4 E(): 4.4e-142 Smith-Waterman score: 2339; 86.600% identity (93.548% similar) in 403 aa overlap (13-415:195-597) 10 20 30 40 mKIAA0 RDRLRGCHRAPSRSRRGGFGSGAAMIEVVAELSRGPVFLAGE : :.... ::::::: ::::::::::: gi|149 SEAERRPKEPPGEGGTGPGPQVSFSGNSGERPGRANLSLLPAMIEVVASLSRGPVFLAGE 170 180 190 200 210 220 50 60 70 80 90 100 mKIAA0 ALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQT :::::::::::: ::::::::::::::::::::::::::::: :::::::::::::.::: gi|149 ALECVVTVTNPLSPTATSASSEALAWASAQIHCQFHASESRVILPPPDSSQPDVQPESQT 230 240 250 260 270 280 110 120 130 140 150 160 mKIAA0 VFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKL :::::::::::::::::::::::::::::::::::::.::::..:::::::::::::::: gi|149 VFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYTEVLPVDGPPSFRGQSVKYVYKL 290 300 310 320 330 340 170 180 190 200 210 220 mKIAA0 TIGCQRVNSPITLLRVPLRVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELA ::::::::::::::::::::::::::::. ::::::::::::::::..: .::: ::::: gi|149 TIGCQRVNSPITLLRVPLRVLVLTGLQDACFPQDEAVAPSSPFLEEEESRRKDSQLAELA 350 360 370 380 390 400 230 240 250 260 270 280 mKIAA0 GERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVS :: :::::: :.:::::::::.:::::: :::::::::::.::::.: ::.::::::::: gi|149 GELLMAATSRRNLHLYNISDGHGKVGTFCIFKSVYRLGEDIVGTLSLEEGAVACLQFSVS 410 420 430 440 450 460 290 300 310 320 330 340 mKIAA0 LQTEERVQPEYQRRRGTGVAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIV ::::: ::::::::::.: :.::::::::::::::::.:::: ::::: :::::::::: gi|149 LQTEESVQPEYQRRRGSGGPPAVSHVTHARHQESCLHTARTSFCLPIPLSSTPGFCTAIV 470 480 490 500 510 520 350 360 370 380 390 400 mKIAA0 SLKWRLHFEFVTSREPGLVLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVS ::.:::::::::::::::::::: : :: :: :::::::::::::::::::::::. .: gi|149 SLRWRLHFEFVTSREPGLVLLPPTEWPESRTWMGPEQVPVDTFSWDLPIKVLPTSPAQAS 530 540 550 560 570 580 410 mKIAA0 YAAPGPSTSSITI :..:::::...:: gi|149 YSTPGPSTNTVTI 590 415 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 17:18:59 2009 done: Fri Mar 13 17:25:31 2009 Total Scan time: 890.380 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]