FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0732.ptfa, 972 aa
 vs ./tmplib.26680 library

1768045 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.0288+/-0.00589; mu= 13.5229+/- 0.394
 mean_var=163.3562+/-37.962, 0's: 0 Z-trim: 5  B-trim: 6 in 1/35
 Lambda= 0.1003

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0250  ( 1157 res)   mbg18024                  (1157)  318   59 4.7e-09
mKIAA1089  ( 1064 res)   mpm09089                  (1064)  250   49 4.1e-06


>>mKIAA0250  ( 1157 res)   mbg18024                       (1157 aa)
 initn: 423 init1: 178 opt: 318  Z-score: 255.0  bits: 58.9 E(): 4.7e-09
Smith-Waterman score: 334;  23.014% identity (28.753% ungapped) in 491 aa overlap (128-595:5-420)

       100       110       120       130       140       150       
mKIAA0 PGYPAPSGQYVCSPLPASTMSPEEIEQHVRNMQQQELHRLLRVADNQELQLSNLLSRDRI
                                     :.. .   :   . ....:. ::. . . .
mKIAA0                           SLWENVSFKSQMRTENLKSEEHLKSSNIRQAEVL
                                         10        20        30    

       160             170       180       190       200       210 
mKIAA0 STE------GMEKMAQLRTELLQLYERCILLDIEFSDSQNVDQILWKNAFYQVIEKFRQL
       ..:      :  ..   :  : .::.. .. :.:.. ...:.: ::..:: . :  ..  
mKIAA0 KAEMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQ
           40        50        60        70        80        90    

             220       230       240       250       260       270 
mKIAA0 LKDPNSENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTV
        :.  . :  ...  :  .:. .: :. .:::.: ....  :   . .  .     ..: 
mKIAA0 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH
          100       110       120       130       140       150    

             280                290       300       310       320  
mKIAA0 KYALISAQR---SMICQ------GDISRYREQANDTANYGKARSWYLKAQHIAPKNGRPY
       . .... :    :.:::      :::.:::.:..      .:.:.: .: ...:.::.::
mKIAA0 SSTIVKPQSSSCSYICQHCLVHLGDIARYRNQTS------QAESYYRHAAQLVPSNGQPY
          160       170       180             190       200        

            330       340       350       360       370       380  
mKIAA0 NQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFD
       ::::.::     .: ...:: ::.:.. :. .:. .:.      :  .. .:..     :
mKIAA0 NQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ------KALSKALESR-----D
      210       220       230       240             250            

            390       400       410       420       430       440  
mKIAA0 MSPDKWRKGKKSTFRHVGDDTTRLEIWIHPSHSRSAQGTESGKDSEQENGLGSLSPSDLN
           ::                                           :.     ::  
mKIAA0 ELKTKW-------------------------------------------GV-----SD--
       260                                                         

            450       460       470       480       490       500  
mKIAA0 KRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFA
         :: .:.. ::...   ..: .  . ::. ..:. :: ..   ..: ..... .::.: 
mKIAA0 --FIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKA--FNSQQLVHVTVINLFQ
         270       280       290       300         310       320   

            510       520           530        540       550       
mKIAA0 VHNSQLKDCFSEECRSVIQEQAASLG----LAMF-SLLVQRCTCLLKDSAKAQLSS---P
       .:.  :.: ::.: ..    :  .:     ::.: :.:   : : :..... . ..   :
mKIAA0 LHH--LRD-FSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQNDSQESNNAYPLP
              330       340       350       360       370       380

          560       570       580       590       600       610    
mKIAA0 EDQEDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPLQVAVDVWSTL
         . ..: ...   : .   .     .:  :...  ....:                   
mKIAA0 AVKVSMDWLRLRPRVFQEAVVDERQYIWP-WLISLLNSFHPREDDLSNTNATPLPEEFEL
              390       400        410       420       430         

          620       630       640       650       660       670    
mKIAA0 ADFCNILTAVNQSEVPLYKDPDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVI
                                                                   
mKIAA0 QGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEVG
     440       450       460       470       480       490         

>>mKIAA1089  ( 1064 res)   mpm09089                       (1064 aa)
 initn: 273 init1: 108 opt: 250  Z-score: 202.1  bits: 49.0 E(): 4.1e-06
Smith-Waterman score: 283;  23.948% identity (26.429% ungapped) in 309 aa overlap (94-389:35-327)

            70        80        90       100       110       120   
mKIAA0 PRTPGPASQYPYAGYSPLQYPVGPTNGMYPGAYYPGYPAPSGQYVCSPLPASTMSPEEIE
                                     ::     :.  : .  .: :. .  ::   
mKIAA1 SQRWRPSRAGGSGGCGYSWRRQWRRQWWVAGACDQEVPSGPGTMSQGPPPGESSEPEAKV
           10        20        30        40        50        60    

           130          140       150       160       170       180
mKIAA0 QHVRNMQQ---QELHRLLRVADNQELQLSNLLSRDRISTEGMEKMAQLRTELLQLYERCI
        :.. . .   . .:::       .: : :  . ...      . ..::..: .:  . .
mKIAA1 LHTKRLYRAVVEAVHRL-------DLILCNKAAYQEVFKP---ENVSLRNKLRELCVKLM
           70        80               90          100       110    

               190       200       210       220       230         
mKIAA0 LLD-IEFSDSQNVDQILWKNAFYQVIEKFRQLLKDPNSENPEQIRNRLLELLDEGSDFFD
       .:  ....  ......::....:.::. ..   :  .:..  .   :    :  :  :..
mKIAA1 FLHPVDYG--RKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTH--LVAGIGFYQ
          120         130       140       150       160         170

     240       250             260          270       280       290
mKIAA0 SLLQKLQVTYKFKLE---DY---MDGLAIRSKPLR---KTVKYALISAQRSMICQGDISR
        ::  .:  :...:.   :.    : :   .::.    : . .: .. .: ..  ::.::
mKIAA1 HLLLYIQSHYQLELQCCIDWTHVTDPLMGFKKPVSASGKEMDWAQMACHRCLVYLGDLSR
              180       190       200       210       220       230

              300       310       320       330       340       350
mKIAA0 YREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASN
       :...   . .   :. .: .:  .::. : :.:::. ::     ...:.: :.: . .  
mKIAA1 YQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEV
              240       250       260       270       280       290

              360       370       380       390       400       410
mKIAA0 PILTAKESLMSLFEETKRKAEQMEKKQHEEFDMSPDKWRKGKKSTFRHVGDDTTRLEIWI
        .  :  .:  :.... .  .:..:.. ..  .::.: :                     
mKIAA1 SFEGAYGNLKRLYDKAAKMYHQLKKSETRK--LSPSKKRCKDIKRLLVNFMYLQSLLQPK
              300       310       320         330       340        

              420       430       440       450       460       470
mKIAA0 HPSHSRSAQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAE
                                                                   
mKIAA1 SSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLGLTNEDEEECESGYAFLPDLLIFQMAII
      350       360       370       380       390       400        




972 residues in 1 query   sequences
1768045 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:27:26 2006 done: Mon Mar 27 10:27:27 2006
 Scan time:  1.000 Display time:  0.080

Function used was FASTA [version 3.4t11 Apr 17, 2002]