FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0449.ptfa, 171 aa vs ./tmplib.26680 library 1768846 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.2833+/-0.00416; mu= 18.7758+/- 0.281 mean_var=76.7718+/-17.398, 0's: 0 Z-trim: 13 B-trim: 0 in 0/36 Lambda= 0.1464 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1708 ( 1291 res) mbg16135 (1291) 791 177 3.1e-45 mKIAA4123 ( 639 res) mbg05860 ( 639) 189 49 4.1e-07 mKIAA1607 ( 355 res) msk09334 ( 355) 158 42 2.9e-05 mKIAA0696 ( 555 res) mbh00867 ( 555) 153 41 7.4e-05 mKIAA4167 ( 342 res) mpj04828 ( 342) 151 41 7.9e-05 mKIAA1449 ( 675 res) mbg03116 ( 675) 145 40 0.00026 mKIAA1547 ( 897 res) mbg07188 ( 897) 141 39 0.00054 mKIAA0993 ( 646 res) mbg00079 ( 646) 138 38 0.00072 mKIAA4188 ( 402 res) mbh00640 ( 402) 136 37 0.00077 mKIAA1942 ( 431 res) mej02524 ( 431) 136 38 0.00079 mKIAA1261 ( 729 res) mfj34130 ( 729) 137 38 0.00088 mKIAA1435 ( 411 res) mbp03169 ( 411) 131 36 0.0016 >>mKIAA1708 ( 1291 res) mbg16135 (1291 aa) initn: 840 init1: 770 opt: 791 Z-score: 904.5 bits: 176.7 E(): 3.1e-45 Smith-Waterman score: 791; 70.345% identity (70.345% ungapped) in 145 aa overlap (2-146:1124-1268) 10 20 30 mKIAA0 QHDLVVTGSKDHYVKMFQLGDCVTGTIGPTH .::..:::::::.:::.. . . ::..::: mKIAA1 WDLKRFQSTGKLTGHLGPVMCLTVDQISNGQDLIITGSKDHYIKMFDVTEGALGTVSPTH 1100 1110 1120 1130 1140 1150 40 50 60 70 80 90 mKIAA0 NFEPPHYDGIECLAIQGDILFSGSRDNGIKKWDLDQQELIQQIPNAHKDWVCALAFVPGR ::::::::::: :::::: ::::::::::::::: :. :.::.:::::::::::..:::. mKIAA1 NFEPPHYDGIEALAIQGDNLFSGSRDNGIKKWDLAQKGLLQQVPNAHKDWVCALGLVPGH 1160 1170 1180 1190 1200 1210 100 110 120 130 140 150 mKIAA0 PMLLSACRAGFIKVWNVDNFTPIGEIKGHDSPINAICTNSKHIFTASSDCRVKLWNYVPG :.:::.::.:..:.::::.:.:.::..::::::::::.:: :.:::..: :..:. mKIAA1 PVLLSGCRGGILKLWNVDTFVPVGEMRGHDSPINAICVNSTHVFTAADDRTVRIWKAHNL 1220 1230 1240 1250 1260 1270 160 170 mKIAA0 LTPCLPRRVLAIKGRATTLP mKIAA1 QDGQLSDTGDLGEDIASN 1280 1290 >>mKIAA4123 ( 639 res) mbg05860 (639 aa) initn: 233 init1: 102 opt: 189 Z-score: 220.1 bits: 49.0 E(): 4.1e-07 Smith-Waterman score: 189; 25.000% identity (28.030% ungapped) in 148 aa overlap (5-147:350-486) 10 20 30 mKIAA0 QHDLVVTGSKDHYVKMFQLG--DCVTGTIGPTHN .:.: .:. .:... . .: : mKIAA4 WRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTG---- 320 330 340 350 360 370 40 50 60 70 80 90 mKIAA0 FEPPHYDGIECLAIQGDILFSGSRDNGIKKWDLDQQELIQQIPNAHKDWVCALAFVPGRP : .. :: . ....:: :. .. ::.. :... . . : . : : : : mKIAA4 ----HTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIH-HCEAVLHLRFNNG-- 380 390 400 410 420 100 110 120 130 140 mKIAA0 MLLSACRAGFIKVWNVDNFTPIGE---IKGHDSPINAICTNSKHIFTASSDCRVKLWNYV :... . : ::.. . : : . :: . .:.. ..:.: .::.: .:.:: mKIAA4 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 430 440 450 460 470 480 150 160 170 mKIAA0 PGLTPCLPRRVLAIKGRATTLP mKIAA4 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 490 500 510 520 530 540 >>mKIAA1607 ( 355 res) msk09334 (355 aa) initn: 65 init1: 65 opt: 158 Z-score: 186.9 bits: 42.1 E(): 2.9e-05 Smith-Waterman score: 158; 27.211% identity (31.008% ungapped) in 147 aa overlap (37-171:152-292) 10 20 30 40 50 60 mKIAA0 TGSKDHYVKMFQLGDCVTGTIGPTHNFEPPHYDGIECL--AIQGDILFSGSRDNGIKKWD : ... :: .. ..: :::.: :: mKIAA1 SGASAVVCIWELSLVKGRPRGLKLRQALYGHTQAVTCLTASVTFSLLVSGSQDRTCILWD 130 140 150 160 170 180 70 80 90 100 110 120 mKIAA0 LDQQELIQQIPNAHKDWVCALAFVPGRPMLLSACRAGFIKVWNVDNFTPIGEIK---GHD ::. . .: .:.. . :.:. ..: : .. ...::: : :.. : : . mKIAA1 LDHLSRVACLP-VHREGISAIAISDVSGTIVS-CAGAHLSLWNV-NGQPLASITTAWGPE 190 200 210 220 230 130 140 150 160 170 mKIAA0 SPINAICT------NSKH-IFTASSDCRVKLWNYVPGLTPCLPRRVLAIKGRATTLP . :. : ...: :.:.:.: :..:. : .::. :. . .: : mKIAA1 GTITCCCIVEGPAWDASHVIITGSKDGMVRIWKTEDVKMP-VPRQ--AVMEEPSTEPLSP 240 250 260 270 280 290 mKIAA1 RGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQSKLLVGDEKGRIFCWSADG 300 310 320 330 340 350 >>mKIAA0696 ( 555 res) mbh00867 (555 aa) initn: 245 init1: 95 opt: 153 Z-score: 179.5 bits: 41.3 E(): 7.4e-05 Smith-Waterman score: 189; 23.333% identity (26.119% ungapped) in 150 aa overlap (3-147:264-402) 10 20 30 mKIAA0 QHDLVVTGSKDHYVKMFQLG--DCVTGTIGPT : ...: .:. .:... . .:. : mKIAA0 SNWRCGRHNLQRIQCRSENSKGVYCLQYDDDKIISGLRDNSIKIWDKSSLECLKVLTG-- 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA0 HNFEPPHYDGIECLAIQGDILFSGSRDNGIKKWDLDQQELIQQIPNAHKDWVCALAFVPG : .. :: . .. .:: :. .. ::.. :... . . :.. : : : : mKIAA0 ------HTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIH-HNEAVLHLRFSNG 300 310 320 330 340 100 110 120 130 140 mKIAA0 RPMLLSACRAGFIKVWNVDNFTPIGE---IKGHDSPINAICTNSKHIFTASSDCRVKLWN .... . : ::.. . : : . :: . .:.. ..:.: .::.: .:.:. mKIAA0 --LMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWS 350 360 370 380 390 400 150 160 170 mKIAA0 YVPGLTPCLPRRVLAIKGRATTLP mKIAA0 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 410 420 430 440 450 460 >>mKIAA4167 ( 342 res) mpj04828 (342 aa) initn: 93 init1: 93 opt: 151 Z-score: 179.0 bits: 40.5 E(): 7.9e-05 Smith-Waterman score: 177; 23.899% identity (26.950% ungapped) in 159 aa overlap (5-156:110-257) 10 20 30 mKIAA0 QHDLVVTGSKDHYVKMFQL--GDCVTGTIGPTHN .:..: :. .:.... : :. : mKIAA4 WGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKG---- 80 90 100 110 120 130 40 50 60 70 80 90 mKIAA0 FEPPHYDGIECLAIQ--GDILFSGSRDNGIKKWDLDQQELIQQIPNAHKDWVCALAFVPG : : . : .. .... ::: :...: :.. . .. . .::.: . :. : . mKIAA4 ----HSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTL-SAHSDPISAVNFNCN 140 150 160 170 180 190 100 110 120 130 140 mKIAA0 RPMLLSACRAGFIKVWNVDNFTPIGEIKGH-DSPINAI--CTNSKHIFTASSDCRVKLWN ...:. :. ..:.. . . . . . :.. . :.:.:.::. : .:::. mKIAA4 GSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWD 200 210 220 230 240 250 150 160 170 mKIAA0 YVPGLTPCLPRRVLAIKGRATTLP : : :: mKIAA4 YSRGR--CLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGH 260 270 280 290 300 >>mKIAA1449 ( 675 res) mbg03116 (675 aa) initn: 84 init1: 84 opt: 145 Z-score: 169.6 bits: 39.8 E(): 0.00026 Smith-Waterman score: 145; 30.337% identity (32.927% ungapped) in 89 aa overlap (73-156:23-109) 50 60 70 80 90 100 mKIAA0 CLAIQGDILFSGSRDNGIKKWDLDQQELIQQIPNAHKDWVCALAFVPGRPMLLSACRAGF .. . ... : :: . :. :..: : .. mKIAA1 AAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSI 10 20 30 40 50 110 120 130 140 150 mKIAA0 IKVWNVDNFT--P-IGEIKGHDSPIN--AICTNSKHIFTASSDCRVKLWNYVPGLTPCLP :..:.:.. : :. .. : . .: ..: :.: ...:::: ::.:: :. :. mKIAA1 IRIWSVNQHKQDPYIASMEHHTDWVNDVVLCCNGKTLISASSDTTVKVWNAHKGF--CMS 60 70 80 90 100 110 160 170 mKIAA0 RRVLAIKGRATTLP mKIAA1 TLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSI 120 130 140 150 160 170 >>mKIAA1547 ( 897 res) mbg07188 (897 aa) initn: 169 init1: 91 opt: 141 Z-score: 164.0 bits: 39.2 E(): 0.00054 Smith-Waterman score: 141; 26.250% identity (30.657% ungapped) in 160 aa overlap (5-151:626-775) 10 20 30 mKIAA0 QHDLVVTGSKDHYVKMFQLGDCVTGTIGPTHNFE : ::.: ::...... :. .: ... mKIAA1 PGIPRHARQINTLSHGEVVCAVTISNPTRHVYTGGKGC-VKIWDISQ--PGSKSPISQLD 600 610 620 630 640 650 40 50 60 70 80 mKIAA0 PPHYDGI--EC-LAIQGDILFSGSRDNGIKKWDLD------QQELIQQIPNAHKDWVCAL . :. : : .: :. :.. . . ::: . :: .. : . :: mKIAA1 CLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACY-----AL 660 670 680 690 700 90 100 110 120 130 140 mKIAA0 AFVPGRPMLLSACRAGFIKVWNVDNFTPIGEIKGHDSPINAICTNSKH----IFTASSDC :. : . .: : : : ::.. : : . ...:: . .: : . .: ..:.. : mKIAA1 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISHDGTKLWTGGLDN 710 720 730 740 750 760 150 160 170 mKIAA0 RVKLWNYVPGLTPCLPRRVLAIKGRATTLP :. :. : mKIAA1 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHE 770 780 790 800 810 820 >>mKIAA0993 ( 646 res) mbg00079 (646 aa) initn: 86 init1: 62 opt: 138 Z-score: 161.8 bits: 38.3 E(): 0.00072 Smith-Waterman score: 138; 24.096% identity (26.316% ungapped) in 166 aa overlap (4-157:212-375) 10 20 30 mKIAA0 QHDLVVTGSKDHYVKMFQLGDCVTGTIGPT-HN ::.::. . : ....: . : .. mKIAA0 GTYESDKAVTVYECLSEWGQILCAVCPNPKLVITGGTSTVVCVWEMGTSKEKAKPLTLKQ 190 200 210 220 230 240 40 50 60 70 80 90 mKIAA0 FEPPHYDGIEC--LAIQGDILFSGSRDNGIKKWDLDQQELIQQIPNAHKDWVCALAFVPG : : . : .. :. ::::: :::.. .. :. .:. : :: . mKIAA0 ALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQL-RGHRAPVSALCINEL 250 260 270 280 290 300 100 110 120 130 140 mKIAA0 RPMLLSACRAGFIKVWNVDN--FTPIGEIKGHDSPINAICTNSKH-------IFTASSDC ..: : . .:.::.... .. .. . :... : : . . : :. :: mKIAA0 TGDIVS-CAGTYIHVWSINGNPIVSVNTFTGRSQQIVCCCMSEMNEWDTQNVIVTGHSDG 310 320 330 340 350 150 160 170 mKIAA0 RVKLWNYVPGLTPCLPRRVLAIKGRATTLP :..: . .: : mKIAA0 VVRFWRMEFLQVPETPAPEPVEDLEMQEGCPEAQIGQQAQDDDSSDSETEEPSVSQDPKD 360 370 380 390 400 410 >>mKIAA4188 ( 402 res) mbh00640 (402 aa) initn: 161 init1: 85 opt: 136 Z-score: 161.3 bits: 37.5 E(): 0.00077 Smith-Waterman score: 136; 25.926% identity (29.787% ungapped) in 162 aa overlap (1-151:129-280) 10 20 30 mKIAA0 QHDLVVTGSKDHYVKMFQLGDCVTGTIGPT :: : ::.: ::....:. :. :. mKIAA4 VGTGIPRHARQLHTLAHGEVVCAVTISSSTQH--VYTGGKGC-VKVWDVGQ--PGSKTPV 100 110 120 130 140 150 40 50 60 70 80 mKIAA0 HNFEPPHYDGI--EC-LAIQGDILFSGSRDNGIKKWDLD------QQELIQQIPNAHKDW ... . :. : : .:. :. :.. . .. ::: . :: .. : . mKIAA4 AQLDCLNRDNYIRSCKLLPDGQSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY--- 160 170 180 190 200 210 90 100 110 120 130 mKIAA0 VCALAFVPGRPMLLSACRAGFIKVWNVDNFTPIGEIKGHDSPINAI--CTNSKHIFTASS ::: : . .: : : : ::...: . . ...:: . . : . ...:.. mKIAA4 --ALAVSPDAKVCFSCCSDGNIVVWDLQNQAMVRQFQGHTDGASCIDISDYGTRLWTGGL 220 230 240 250 260 140 150 160 170 mKIAA0 DCRVKLWNYVPGLTPCLPRRVLAIKGRATTLP : :. :. : mKIAA4 DNTVRCWDLREGRQLQQHDFSSQIFSLGHCPNQDWLAVGMESSHVEVLHVRKPEKYQLRL 270 280 290 300 310 320 >>mKIAA1942 ( 431 res) mej02524 (431 aa) initn: 160 init1: 67 opt: 136 Z-score: 161.1 bits: 37.6 E(): 0.00079 Smith-Waterman score: 136; 26.606% identity (29.293% ungapped) in 109 aa overlap (49-147:259-367) 20 30 40 50 60 70 mKIAA0 LGDCVTGTIGPTHNFEPPHYDGIECLAIQGDILF-SGSRDNGIKKWDLDQ---QELIQQI : .: : : : .:. ::. . . mKIAA1 PTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTT 230 240 250 260 270 280 80 90 100 110 120 130 mKIAA0 PNAHKDWVCALAFVPGRPMLLSACRAGFIKVWNVDNF---TPIGEIKGHDSPINAICTNS .:: : .... .:.:::. : .:::.. .: .:.. .: : .:.... . mKIAA1 ATAHDGDVNVISWSRREPFLLSGGDDGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHP 290 300 310 320 330 340 140 150 160 170 mKIAA0 KH--IFTAS-SDCRVKLWNYVPGLTPCLPRRVLAIKGRATTLP . .:.:: .: .. :. mKIAA1 QDSGVFAASGADNQITQWDLAVERDPESGETETDPGLAALPQQLLFVHQGETDLKELHWH 350 360 370 380 390 400 171 residues in 1 query sequences 1768846 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:21:03 2006 done: Mon Mar 27 10:21:03 2006 Scan time: 0.340 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]